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IMGVR_UViG_3300002481_000002-3300002481-JGI24020J35080_100032771

Arc-Vir

IMGVR_UViG_3300002481_000002-3300002481-JGI24020J35080_100032771

Identity

Kingdom:
archaea

Quality

79.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-76
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 3.59e-01 74.7% 58.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.40e-01 78.7% 87.7%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 47.0 3.23e-01 85.3% 63.1%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.55e-01 100.0% 80.2%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.58 42.0 4.20e-01 76.0% 94.7%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.19e-01 100.0% 71.7%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.58 36.0 3.18e-01 80.0% 40.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 4.21e-01 77.3% 96.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.81e-01 78.7% 84.5%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 42.0 3.29e-01 80.0% 70.5%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 39.0 3.53e-01 73.3% 71.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.55 37.0 3.31e-01 72.0% 67.5%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.41e-01 80.0% 77.3%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 42.0 3.57e-01 82.7% 97.5%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 41.0 3.36e-01 82.7% 99.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.53 38.0 3.61e-01 77.3% 61.1%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 30.0 3.28e-01 88.0% 69.1%
1vbiA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.52 41.0 2.99e-01 88.0% 64.6%
1wquA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.59e-01 85.3% 85.1%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.52e-01 81.3% 64.0%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 40.0 2.91e-01 86.7% 60.1%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.52 33.0 3.50e-01 100.0% 78.7%
2ddmB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 42.0 2.85e-01 88.0% 53.9%
3r4rA02 2.60.40.2590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.04e-01 72.0% 90.4%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 40.0 3.00e-01 84.0% 87.4%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3472026 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.60 52.0 4.51e-01 100.0% 83.3%
5044375 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.59 43.0 3.10e-01 78.7% 71.5%
3474122 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.58 41.0 2.74e-01 76.0% 24.3%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 3.98e-01 98.7% 55.5%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.18e-01 78.7% 77.5%
3782222 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 3.97e-01 100.0% 54.2%
3714703 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.57 39.0 3.57e-01 70.7% 76.0%
1723253 7575.1.1.6 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C80 0.57 49.0 3.21e-01 93.3% 86.5%
3843531 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 40.0 3.63e-01 73.3% 76.0%
3887124 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 49.0 3.83e-01 100.0% 52.0%
3518510 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 39.0 3.52e-01 73.3% 72.4%
3219961 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 39.0 3.33e-01 76.0% 77.8%
4586498 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 47.0 4.02e-01 100.0% 70.8%
3722450 223.2.1.10 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA 0.54 41.0 3.32e-01 81.3% 91.0%
3502859 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 36.0 2.46e-01 86.7% 18.0%
3802532 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 44.0 3.25e-01 94.7% 42.7%
3408734 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 41.0 2.74e-01 82.7% 66.9%
3605369 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 4.22e-01 92.0% 98.2%
3604095 2.21.1.0 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.53 38.0 3.49e-01 77.3% 95.2%
3709649 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.53 41.0 3.50e-01 85.3% 55.4%
3658860 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 3.05e-01 89.3% 29.5%
3439202 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 40.0 3.86e-01 82.7% 89.4%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 46.0 4.30e-01 100.0% 84.2%
3217638 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 4.15e-01 88.0% 92.0%
4644747 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.51 40.0 4.02e-01 90.7% 91.3%
3937758 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 39.0 3.48e-01 84.0% 91.2%
3327575 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 38.0 3.48e-01 80.0% 91.0%
3348638 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 40.0 3.44e-01 82.7% 87.8%
3705528 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.51 39.0 3.15e-01 81.3% 68.3%
3457086 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 44.0 3.01e-01 100.0% 65.6%