←Back to structures
IMGVR_UViG_3300002481_000002-3300002481-JGI24020J35080_100032773
Arc-VirIMGVR_UViG_3300002481_000002-3300002481-JGI24020J35080_100032773
Identity
- Kingdom:
- archaea
Quality
79.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-86
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.70 | 49.0 | 4.60e-01 | 74.0% | 65.3% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.69 | 55.0 | 5.30e-01 | 85.7% | 86.2% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 52.0 | 4.19e-01 | 84.4% | 62.7% |
| 3vadA01 | 1.20.140.20 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Alpha-ketoacid/pyruvate dehydrogenase kinase, N-terminal domain | 0.66 | 53.0 | 4.16e-01 | 85.7% | 65.4% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 51.0 | 3.80e-01 | 87.0% | 47.4% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.64 | 50.0 | 4.19e-01 | 87.0% | 87.9% |
| 1k92A02 | 3.90.1260.10 | Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 | 0.64 | 48.0 | 3.50e-01 | 80.5% | 90.2% |
| 1lq7A00 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.63 | 49.0 | 5.13e-01 | 88.3% | 98.5% |
| 3a04A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.63 | 43.0 | 3.81e-01 | 84.4% | 47.4% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 48.0 | 4.24e-01 | 87.0% | 77.9% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.62 | 42.0 | 3.40e-01 | 70.1% | 57.7% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.61 | 50.0 | 4.61e-01 | 92.2% | 88.1% |
| 2copA00 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.61 | 46.0 | 4.11e-01 | 80.5% | 78.0% |
| 2hfiA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.61 | 48.0 | 4.13e-01 | 85.7% | 65.9% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.61 | 47.0 | 3.93e-01 | 85.7% | 48.9% |
| 1qkrB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.60 | 51.0 | 3.96e-01 | 97.4% | 92.8% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 46.0 | 4.09e-01 | 85.7% | 75.0% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 47.0 | 4.36e-01 | 92.2% | 91.3% |
| 3nb2A04 | 1.10.4140.10 | Mainly Alpha › Orthogonal Bundle › effector protein (NleL) fold › effector protein (NleL) | 0.56 | 46.0 | 3.61e-01 | 93.5% | 71.2% |
| 3kkbA00 | 1.20.120.880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain | 0.56 | 44.0 | 3.71e-01 | 84.4% | 69.8% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.55 | 42.0 | 2.90e-01 | 84.4% | 51.8% |
| 2hh6A00 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.55 | 43.0 | 3.91e-01 | 89.6% | 62.2% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.54 | 37.0 | 3.63e-01 | 71.4% | 96.5% |
| 7ebcA01 | 1.10.10.850 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 39.0 | 3.52e-01 | 79.2% | 86.2% |
| 7wgrA02 | 3.40.50.12470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 38.0 | 2.76e-01 | 77.9% | 39.8% |
| 2oq1A02 | 1.10.930.10 | Mainly Alpha › Orthogonal Bundle › Syk Kinase; Chain A, domain 2 › Syk Kinase; Chain A, domain 2 | 0.53 | 29.0 | 3.61e-01 | 71.4% | 93.3% |
| 3mvuA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.52 | 40.0 | 2.98e-01 | 85.7% | 63.4% |
| 3qbrX00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 39.0 | 3.25e-01 | 88.3% | 89.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029967 | 633.1.1.0 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain | 0.75 | 55.0 | 4.80e-01 | 77.9% | 74.8% |
| 3458091 | 632.1.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Rx_N | 0.72 | 57.0 | 5.55e-01 | 85.7% | 94.1% |
| 4947622 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.70 | 53.0 | 4.46e-01 | 83.1% | 87.4% |
| 4537743 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.69 | 56.0 | 4.39e-01 | 88.3% | 90.9% |
| 3514217 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.69 | 54.0 | 5.11e-01 | 85.7% | 90.5% |
| 5060981 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.69 | 47.0 | 5.46e-01 | 71.4% | 100.0% |
| 163933 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.68 | 46.0 | 3.70e-01 | 70.1% | 59.2% |
| 3589651 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.68 | 53.0 | 4.19e-01 | 87.0% | 52.4% |
| 4547562 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.68 | 54.0 | 4.25e-01 | 88.3% | 92.1% |
| 4044897 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.65 | 44.0 | 3.59e-01 | 70.1% | 58.6% |
| 3988566 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 47.0 | 4.82e-01 | 83.1% | 91.4% |
| 3585028 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.62 | 49.0 | 4.56e-01 | 89.6% | 91.0% |
| 54459 | 601.3.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain | 0.61 | 46.0 | 3.78e-01 | 80.5% | 45.3% |
| 3702025 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.59 | 50.0 | 4.64e-01 | 97.4% | 93.0% |
| 3193619 | 219.1.1.112 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 | 0.59 | 50.0 | 3.44e-01 | 96.1% | 36.3% |
| 3509307 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.59 | 45.0 | 3.56e-01 | 85.7% | 50.9% |
| 3228384 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.57 | 48.0 | 4.31e-01 | 96.1% | 98.2% |
| 3944587 | 101.1.4.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DNA_meth_N | 0.57 | 42.0 | 4.38e-01 | 79.2% | 95.7% |
| 4884138 | 4275.1.1.2 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_Mu_Gp36 | 0.56 | 47.0 | 4.03e-01 | 90.9% | 72.0% |
| 2701721 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.53 | 42.0 | 3.47e-01 | 87.0% | 47.9% |
| 3486635 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.51 | 37.0 | 3.98e-01 | 85.7% | 95.4% |
| 4650 | 4125.1.1.1 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like › DUF1048 | 0.51 | 42.0 | 3.78e-01 | 96.1% | 69.6% |
| 5023608 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.50 | 40.0 | 3.44e-01 | 89.6% | 89.2% |