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IMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034815

Arc-Vir

IMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034815

Identity

Kingdom:
archaea

Quality

65.6 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-70
PDB
D2 high residues 134-229
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.69 34.0 3.52e-01 83.3% 50.6%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 5.29e-01 85.4% 92.0%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 5.10e-01 91.7% 85.4%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 5.12e-01 87.5% 86.3%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.92e-01 90.6% 81.2%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 5.04e-01 89.6% 80.2%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 4.91e-01 90.6% 82.4%
5dcmB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.72e-01 87.5% 73.5%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 5.56e-01 90.6% 98.8%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.74e-01 90.6% 81.0%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 5.25e-01 88.5% 91.7%
2ly1A03 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.64 44.0 4.74e-01 86.5% 84.0%
1zelA01 3.90.56.20 Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › replication protein C, winged helix domain 0.64 44.0 4.43e-01 97.9% 70.4%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 45.0 4.43e-01 85.4% 70.9%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.35e-01 91.7% 75.0%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 36.0 4.15e-01 74.0% 83.3%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.61 49.0 3.62e-01 88.5% 84.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.60 48.0 4.23e-01 85.4% 91.4%
3zq7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.18e-01 88.5% 74.3%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 45.0 4.42e-01 85.4% 80.6%
2k7bA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 35.0 3.89e-01 88.5% 84.2%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 4.23e-01 87.5% 83.5%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 23.0 3.11e-01 74.0% 75.5%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.52 46.0 4.06e-01 100.0% 91.8%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.52 46.0 3.82e-01 100.0% 70.7%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 36.0 3.86e-01 91.7% 84.1%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 42.0 3.91e-01 93.8% 74.4%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.35e-01 100.0% 40.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 2.71e-01 86.5% 65.0%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.02e-01 100.0% 25.5%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3955817 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.75 37.0 3.70e-01 71.9% 46.9%
5024565 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.74 52.0 4.59e-01 100.0% 51.1%
5000704 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 54.0 5.55e-01 88.5% 81.1%
3165321 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.73 54.0 5.59e-01 87.5% 82.2%
4972865 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.73 53.0 5.02e-01 89.6% 63.7%
4997662 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 50.0 4.81e-01 86.5% 61.8%
4941699 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 52.0 5.75e-01 91.7% 94.7%
5035624 101.1.2.54 ↗ alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.73 52.0 5.46e-01 74.0% 94.1%
3737539 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.72 51.0 5.52e-01 88.5% 88.7%
4932158 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.72 49.0 5.20e-01 87.5% 80.0%
4941351 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 5.05e-01 86.5% 78.8%
4505043 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.70 50.0 4.31e-01 91.7% 48.3%
5030252 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 49.0 4.92e-01 89.6% 71.0%
4600617 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.69 49.0 4.25e-01 90.6% 47.3%
4939871 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.69 50.0 4.84e-01 89.6% 68.6%
5021360 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.69 50.0 5.15e-01 89.6% 80.9%
4958040 101.1.2.896 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.69 51.0 5.13e-01 89.6% 77.9%
4263795 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.69 47.0 5.21e-01 84.4% 90.7%
3279756 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.69 48.0 4.26e-01 88.5% 50.0%
2520598 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.68 48.0 4.35e-01 91.7% 53.8%
5049740 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 50.0 3.56e-01 88.5% 26.9%
5031078 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 46.0 4.59e-01 85.4% 68.0%
4997360 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 3.72e-01 88.5% 32.2%
2137469 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 47.0 4.11e-01 91.7% 48.3%
5028427 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 46.0 4.55e-01 85.4% 65.7%
4996226 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 47.0 4.67e-01 86.5% 70.0%
4135088 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.67 47.0 4.09e-01 91.7% 47.3%
4970916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 49.0 4.83e-01 89.6% 71.4%
3997898 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.66 47.0 4.49e-01 86.5% 62.6%
3167236 148.1.3.31 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM4_WHD 0.66 50.0 5.33e-01 91.7% 91.8%
5076211 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 4.43e-01 89.6% 63.6%
3928777 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.65 51.0 4.94e-01 99.0% 73.6%
3257129 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.65 47.0 4.36e-01 86.5% 60.0%
5079431 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 4.47e-01 85.4% 59.2%
4625029 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.65 49.0 4.82e-01 90.6% 73.3%
5028122 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 45.0 4.10e-01 100.0% 53.1%
None — 0.65 48.0 4.34e-01 88.5% 57.4%
5064203 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 46.0 4.77e-01 87.5% 80.0%
5072962 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.71e-01 89.6% 78.9%
5053142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.77e-01 89.6% 86.7%
3930245 101.1.2.407 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.62 46.0 4.41e-01 89.6% 69.1%
2685 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 4.39e-01 91.7% 77.5%
5063930 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 43.0 4.44e-01 86.5% 77.8%
3630104 192.24.1.6 ↗ alpha bundles › Long alpha-hairpin › RPC62 helical hairpin domain › RPC62 helical hairpin domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.61 47.0 3.16e-01 90.6% 21.1%
3609520 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 4.56e-01 84.4% 97.9%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.56 38.0 4.32e-01 83.3% 97.1%
3705541 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 4.42e-01 86.5% 93.0%
3934016 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 38.0 2.46e-01 89.6% 18.2%
None — 0.54 48.0 3.23e-01 100.0% 31.7%
3382274 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.53 48.0 2.81e-01 100.0% 14.7%
3168944 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.51 45.0 2.99e-01 100.0% 31.0%
4203120 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.51 45.0 2.94e-01 100.0% 30.1%
5009633 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 4.15e-01 86.5% 92.2%
4486690 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 45.0 3.11e-01 100.0% 41.2%
3309808 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 45.0 3.47e-01 100.0% 52.7%
3786489 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 45.0 3.07e-01 100.0% 29.3%