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IMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034816
Arc-VirIMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034816
Identity
- Kingdom:
- archaea
Quality
75.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-51
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 61.0 | 5.10e-01 | 96.1% | 88.1% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.69 | 58.0 | 4.66e-01 | 94.1% | 50.6% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.69 | 48.0 | 3.77e-01 | 92.2% | 35.5% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.68 | 53.0 | 4.47e-01 | 90.2% | 50.6% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.67 | 58.0 | 4.12e-01 | 98.0% | 38.1% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 49.0 | 4.27e-01 | 84.3% | 50.6% |
| 3t0yA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 43.0 | 3.98e-01 | 78.4% | 54.5% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.64 | 53.0 | 4.90e-01 | 94.1% | 75.0% |
| 3h6pC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.63 | 53.0 | 5.13e-01 | 94.1% | 82.1% |
| 1sqhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 42.0 | 2.86e-01 | 78.4% | 21.1% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 52.0 | 4.53e-01 | 90.2% | 80.0% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 43.0 | 3.30e-01 | 80.4% | 34.5% |
| 2r8rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 48.0 | 3.21e-01 | 100.0% | 21.5% |
| 2cfoA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.60 | 43.0 | 4.26e-01 | 80.4% | 75.9% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 50.0 | 3.63e-01 | 100.0% | 33.1% |
| 16vpA00 | 1.10.1290.10 | Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) | 0.60 | 51.0 | 3.20e-01 | 100.0% | 64.6% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.60 | 48.0 | 4.29e-01 | 90.2% | 100.0% |
| 4nv1E01 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.60 | 50.0 | 3.51e-01 | 100.0% | 53.2% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 51.0 | 4.34e-01 | 96.1% | 64.1% |
| 7z67A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 40.0 | 2.64e-01 | 74.5% | 88.5% |
| 4qxbB00 | 6.10.280.250 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 41.0 | 3.73e-01 | 86.3% | 57.4% |
| 2ld7A00 | 6.10.160.20 | Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.56 | 43.0 | 3.67e-01 | 96.1% | 47.9% |
| 2n5fA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 40.0 | 3.11e-01 | 78.4% | 34.1% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.54 | 46.0 | 3.12e-01 | 92.2% | 34.6% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 47.0 | 3.08e-01 | 96.1% | 39.1% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978937 | 3447.1.1.4 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › PEMT | 0.83 | 60.0 | 3.97e-01 | 76.5% | 50.0% |
| 3978264 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.81 | 55.0 | 3.86e-01 | 70.6% | 25.3% |
| 3973283 | 325.1.7.27 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › HH_AprE | 0.78 | 54.0 | 3.55e-01 | 86.3% | 19.0% |
| 3961547 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.76 | 57.0 | 4.42e-01 | 78.4% | 43.0% |
| 3581757 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.73 | 52.0 | 3.28e-01 | 94.1% | 16.9% |
| 4574972 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.70 | 55.0 | 5.16e-01 | 88.2% | 70.0% |
| 5072293 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.69 | 56.0 | 4.70e-01 | 90.2% | 92.0% |
| 3293941 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.68 | 52.0 | 3.42e-01 | 82.4% | 80.5% |
| 3754031 | 4120.1.1.36 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › cwf21 | 0.65 | 55.0 | 4.49e-01 | 94.1% | 63.2% |
| 3742018 | 7094.1.1.2 ↗ | alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › LIS_MGM1 | 0.65 | 48.0 | 4.00e-01 | 84.3% | 44.2% |
| 3909150 | 5063.1.1.15 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA | 0.64 | 54.0 | 4.74e-01 | 94.1% | 65.3% |
| 5057229 | 371.1.1.0 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 | 0.64 | 55.0 | 4.13e-01 | 100.0% | 40.8% |
| 3919989 | 192.5.1.19 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA | 0.61 | 52.0 | 4.48e-01 | 94.1% | 61.3% |
| 2831866 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.61 | 47.0 | 3.51e-01 | 88.2% | 34.7% |
| 3944501 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 49.0 | 4.18e-01 | 92.2% | 70.0% |
| 3895077 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 47.0 | 4.18e-01 | 98.0% | 71.1% |
| 3441839 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.57 | 41.0 | 3.69e-01 | 76.5% | 54.1% |
| 4664482 | 101.1.1.99 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF4096 | 0.57 | 42.0 | 3.73e-01 | 82.4% | 54.7% |
| 3663727 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.52 | 42.0 | 3.39e-01 | 90.2% | 62.9% |
| 3322387 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.52 | 41.0 | 2.98e-01 | 88.2% | 39.4% |