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IMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034838
Arc-VirIMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034838
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-83
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.75 | 59.0 | 5.20e-01 | 100.0% | 58.9% |
| 2g6gA02 | 2.40.240.50 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases | 0.61 | 49.0 | 3.63e-01 | 98.5% | 31.8% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.61 | 56.0 | 4.45e-01 | 100.0% | 53.7% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.60 | 40.0 | 2.53e-01 | 100.0% | 13.6% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.59 | 50.0 | 4.90e-01 | 100.0% | 93.1% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.58 | 50.0 | 4.81e-01 | 100.0% | 89.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988093 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.99 | 96.0 | 7.96e-01 | 100.0% | 65.4% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.82 | 59.0 | 6.25e-01 | 100.0% | 84.7% |
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.81 | 64.0 | 6.77e-01 | 100.0% | 94.9% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.78 | 58.0 | 6.34e-01 | 100.0% | 96.4% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 54.0 | 5.37e-01 | 100.0% | 74.3% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 54.0 | 5.90e-01 | 100.0% | 94.5% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.74 | 58.0 | 4.84e-01 | 100.0% | 51.4% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 61.0 | 6.20e-01 | 98.5% | 96.9% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 63.0 | 6.12e-01 | 100.0% | 93.3% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.69 | 56.0 | 4.49e-01 | 100.0% | 47.5% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.67 | 58.0 | 5.78e-01 | 100.0% | 90.0% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.67 | 53.0 | 5.56e-01 | 100.0% | 95.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.66 | 51.0 | 5.39e-01 | 100.0% | 93.3% |
| 4983299 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.64 | 57.0 | 5.28e-01 | 100.0% | 83.5% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.64 | 57.0 | 5.58e-01 | 100.0% | 91.8% |
| 4602455 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.64 | 56.0 | 5.49e-01 | 100.0% | 94.5% |
| 4975116 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.63 | 56.0 | 5.31e-01 | 100.0% | 88.7% |
| 5025019 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.61 | 54.0 | 5.02e-01 | 100.0% | 85.7% |
| 4948446 | 7541.1.1.2 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoeA_C | 0.60 | 53.0 | 3.58e-01 | 100.0% | 27.7% |
| 5011090 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.59 | 52.0 | 5.07e-01 | 100.0% | 93.3% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.59 | 49.0 | 4.94e-01 | 100.0% | 97.1% |
| 4938684 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 50.0 | 4.71e-01 | 100.0% | 85.9% |
| 3385835 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.58 | 49.0 | 4.69e-01 | 100.0% | 93.8% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 50.0 | 4.82e-01 | 100.0% | 92.3% |
| 4956897 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 50.0 | 4.78e-01 | 100.0% | 91.3% |
| 4991571 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.58 | 49.0 | 4.73e-01 | 100.0% | 91.3% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.57 | 49.0 | 3.97e-01 | 100.0% | 67.1% |
| 4973749 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 34.0 | 3.41e-01 | 88.1% | 57.1% |
| 4116968 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.51 | 43.0 | 3.45e-01 | 100.0% | 86.7% |
D2
high
residues 87-115_130-154
Domain cluster:
rep: NC_074638__YP_010772018.1__QIT35-gp28__00028__D11-63
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.80 | 73.0 | 6.54e-01 | 100.0% | 91.7% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.80 | 73.0 | 6.41e-01 | 100.0% | 89.6% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 71.0 | 5.81e-01 | 100.0% | 63.4% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.72 | 63.0 | 5.26e-01 | 100.0% | 60.0% |
| 1gp6A00 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.57 | 40.0 | 2.52e-01 | 77.8% | 77.4% |
| 3pz6D00 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.56 | 43.0 | 2.85e-01 | 87.0% | 44.9% |
| 4mypA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 40.0 | 3.05e-01 | 100.0% | 33.1% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 41.0 | 4.13e-01 | 100.0% | 78.9% |
| 1u3oA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 38.0 | 3.68e-01 | 77.8% | 69.4% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 40.0 | 3.42e-01 | 100.0% | 48.0% |
| 2xtsA02 | 2.60.40.650 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 38.0 | 2.97e-01 | 100.0% | 33.8% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.50 | 40.0 | 3.19e-01 | 98.1% | 40.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.87 | 77.0 | 7.71e-01 | 96.3% | 90.9% |
| 4963571 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.86 | 80.0 | 7.42e-01 | 100.0% | 81.5% |
| 5016125 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.85 | 79.0 | 7.85e-01 | 100.0% | 96.4% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.84 | 77.0 | 6.97e-01 | 100.0% | 75.7% |
| 4930420 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.82 | 77.0 | 6.93e-01 | 100.0% | 77.1% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 72.0 | 5.26e-01 | 100.0% | 42.9% |
| 4953517 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.80 | 73.0 | 6.48e-01 | 100.0% | 91.9% |
| 3602933 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 72.0 | 6.71e-01 | 98.1% | 90.8% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 72.0 | 6.55e-01 | 100.0% | 91.4% |
| 4975116 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.78 | 72.0 | 6.24e-01 | 100.0% | 90.0% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.78 | 71.0 | 6.36e-01 | 100.0% | 93.2% |
| 2640772 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.78 | 71.0 | 5.69e-01 | 100.0% | 59.0% |
| 3603211 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.77 | 70.0 | 6.08e-01 | 100.0% | 88.7% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.77 | 68.0 | 6.21e-01 | 96.3% | 94.2% |
| 5011090 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.76 | 67.0 | 5.99e-01 | 96.3% | 92.0% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.76 | 69.0 | 6.67e-01 | 100.0% | 95.0% |
| 5017350 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.75 | 68.0 | 6.21e-01 | 100.0% | 94.3% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.75 | 65.0 | 6.30e-01 | 96.3% | 93.3% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.74 | 66.0 | 6.38e-01 | 100.0% | 91.7% |
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.73 | 65.0 | 6.54e-01 | 100.0% | 98.2% |
| 5016905 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.73 | 65.0 | 5.99e-01 | 98.1% | 95.6% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.72 | 64.0 | 4.92e-01 | 100.0% | 48.3% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.71 | 60.0 | 4.90e-01 | 100.0% | 52.3% |
| 3432928 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.68 | 49.0 | 2.99e-01 | 77.8% | 75.1% |
| 4952105 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.62 | 46.0 | 3.78e-01 | 81.5% | 78.1% |
| 3352768 | 10.12.1.17 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N | 0.60 | 44.0 | 2.72e-01 | 79.6% | 76.5% |
| 3786521 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.60 | 54.0 | 4.15e-01 | 100.0% | 47.0% |
| 3811937 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.59 | 42.0 | 2.70e-01 | 77.8% | 26.9% |
| 3180074 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.56 | 49.0 | 4.10e-01 | 100.0% | 67.4% |
| 5002155 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 48.0 | 3.94e-01 | 100.0% | 65.0% |
| 3415428 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.53 | 46.0 | 3.72e-01 | 100.0% | 52.4% |
| 1866319 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.51 | 36.0 | 3.08e-01 | 75.9% | 60.2% |
| 3723768 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 42.0 | 3.64e-01 | 98.1% | 61.1% |