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IMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034849
Arc-VirIMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034849
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-55
Domain cluster:
representative
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.77 | 63.0 | 4.23e-01 | 92.0% | 34.0% |
| 2w01B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.75 | 45.0 | 2.94e-01 | 98.0% | 15.2% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.74 | 65.0 | 4.60e-01 | 100.0% | 53.2% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.71 | 50.0 | 4.40e-01 | 82.0% | 49.4% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.70 | 47.0 | 3.32e-01 | 76.0% | 22.3% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.70 | 58.0 | 4.40e-01 | 100.0% | 39.2% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.67 | 49.0 | 4.32e-01 | 78.0% | 57.3% |
| 3cebA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.67 | 46.0 | 3.92e-01 | 74.0% | 90.6% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.66 | 56.0 | 4.13e-01 | 100.0% | 55.5% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.66 | 55.0 | 4.10e-01 | 100.0% | 87.7% |
| 4harA00 | 3.10.50.50 | Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein | 0.65 | 43.0 | 3.48e-01 | 70.0% | 34.7% |
| 1gm5A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 45.0 | 3.55e-01 | 82.0% | 35.3% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 49.0 | 3.76e-01 | 90.0% | 35.5% |
| 5wceA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.63 | 52.0 | 3.86e-01 | 92.0% | 51.9% |
| 4pkcC00 | 6.20.90.20 | Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit | 0.63 | 44.0 | 4.74e-01 | 76.0% | 100.0% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.63 | 48.0 | 4.29e-01 | 86.0% | 63.5% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.63 | 53.0 | 3.84e-01 | 98.0% | 86.8% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.61 | 50.0 | 3.80e-01 | 100.0% | 37.9% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 46.0 | 3.12e-01 | 86.0% | 89.2% |
| 3oh8A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 48.0 | 3.43e-01 | 86.0% | 98.6% |
| 4m7xA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 49.0 | 4.05e-01 | 92.0% | 67.0% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 49.0 | 4.70e-01 | 100.0% | 82.3% |
| 1t6aA02 | 3.30.310.120 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein | 0.59 | 43.0 | 3.68e-01 | 100.0% | 50.0% |
| 4perB00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.58 | 45.0 | 3.56e-01 | 86.0% | 63.3% |
| 1u14A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.58 | 44.0 | 3.14e-01 | 86.0% | 37.3% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 47.0 | 3.74e-01 | 98.0% | 48.3% |
| 6j8yA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.58 | 47.0 | 3.12e-01 | 100.0% | 36.2% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 48.0 | 3.45e-01 | 98.0% | 37.2% |
| 3pieC05 | 2.170.260.40 | Mainly Beta › Beta Complex › paz domain › | 0.57 | 46.0 | 3.33e-01 | 100.0% | 28.7% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.57 | 43.0 | 3.23e-01 | 84.0% | 33.1% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 45.0 | 3.33e-01 | 88.0% | 73.3% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 45.0 | 3.72e-01 | 98.0% | 51.9% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 45.0 | 3.29e-01 | 98.0% | 54.3% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 51.0 | 3.56e-01 | 100.0% | 66.4% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 45.0 | 3.59e-01 | 94.0% | 45.0% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 38.0 | 3.12e-01 | 76.0% | 36.1% |
| 4fvaC00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.56 | 47.0 | 2.95e-01 | 92.0% | 53.0% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.55 | 37.0 | 3.09e-01 | 74.0% | 35.8% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.55 | 44.0 | 3.37e-01 | 92.0% | 58.4% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 43.0 | 3.36e-01 | 92.0% | 41.0% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.54 | 47.0 | 3.87e-01 | 96.0% | 97.7% |
| 1epaA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 45.0 | 3.27e-01 | 100.0% | 58.1% |
| 4ikcA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.54 | 45.0 | 2.83e-01 | 94.0% | 52.6% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 37.0 | 3.88e-01 | 84.0% | 82.2% |
| 3a57A00 | 2.60.270.30 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin | 0.54 | 39.0 | 2.82e-01 | 84.0% | 26.0% |
| 1vwxT01 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.53 | 38.0 | 3.20e-01 | 86.0% | 41.2% |
| 1xfsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 42.0 | 3.07e-01 | 92.0% | 94.2% |
| 3h6qA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 44.0 | 3.15e-01 | 100.0% | 70.8% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 44.0 | 3.89e-01 | 90.0% | 66.2% |
| 1o97D01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 43.0 | 2.90e-01 | 90.0% | 43.4% |
| 7r97A02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 37.0 | 3.40e-01 | 76.0% | 64.7% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 41.0 | 3.51e-01 | 94.0% | 59.6% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 36.0 | 3.03e-01 | 78.0% | 40.7% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.52 | 44.0 | 2.66e-01 | 98.0% | 45.3% |
| 5gqoA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 42.0 | 3.47e-01 | 96.0% | 85.6% |
| 6v04A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 46.0 | 3.41e-01 | 100.0% | 63.8% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.17e-01 | 98.0% | 62.2% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.51 | 43.0 | 3.53e-01 | 92.0% | 53.4% |
| 2qm4A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.51 | 41.0 | 3.07e-01 | 96.0% | 89.5% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 41.0 | 3.69e-01 | 88.0% | 66.7% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 41.0 | 3.67e-01 | 90.0% | 66.2% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.50 | 39.0 | 2.97e-01 | 96.0% | 46.9% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4124004 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.79 | 58.0 | 5.28e-01 | 84.0% | 60.0% |
| 4184401 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.77 | 54.0 | 3.71e-01 | 74.0% | 24.4% |
| 5008603 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.76 | 60.0 | 4.07e-01 | 88.0% | 23.2% |
| 5029914 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.75 | 59.0 | 5.74e-01 | 84.0% | 83.6% |
| 4871762 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.74 | 63.0 | 4.61e-01 | 96.0% | 37.0% |
| 4943785 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 65.0 | 4.70e-01 | 100.0% | 70.7% |
| 4680387 | 1.1.10.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Surface presentation of antigens (SPOA) | 0.74 | 48.0 | 4.16e-01 | 72.0% | 42.5% |
| 3714703 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.74 | 65.0 | 5.15e-01 | 100.0% | 52.0% |
| 4120506 | 243.11.1.4 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 | 0.73 | 56.0 | 4.84e-01 | 86.0% | 55.0% |
| 3942150 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.72 | 51.0 | 4.25e-01 | 82.0% | 42.2% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.70 | 60.0 | 4.73e-01 | 100.0% | 46.4% |
| 3707085 | 5.1.2.33 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 | 0.69 | 48.0 | 3.06e-01 | 72.0% | 74.1% |
| 4295277 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.69 | 48.0 | 3.45e-01 | 74.0% | 26.7% |
| 3589823 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.69 | 59.0 | 5.47e-01 | 98.0% | 76.9% |
| 3496857 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.68 | 53.0 | 4.12e-01 | 84.0% | 42.9% |
| 4941649 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.67 | 53.0 | 4.28e-01 | 90.0% | 45.3% |
| 3509056 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.67 | 53.0 | 4.01e-01 | 90.0% | 86.4% |
| 3941356 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.66 | 52.0 | 3.92e-01 | 86.0% | 44.2% |
| 4932472 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.66 | 47.0 | 3.87e-01 | 84.0% | 41.1% |
| 4033840 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.65 | 53.0 | 3.60e-01 | 92.0% | 34.2% |
| 3719842 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.65 | 55.0 | 3.47e-01 | 100.0% | 57.3% |
| 5050683 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 45.0 | 3.41e-01 | 78.0% | 29.6% |
| 4120507 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.65 | 50.0 | 4.11e-01 | 86.0% | 50.5% |
| 3686517 | 220.1.1.112 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 | 0.64 | 52.0 | 3.64e-01 | 90.0% | 27.3% |
| 3670595 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 42.0 | 3.41e-01 | 70.0% | 34.7% |
| 2801086 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.64 | 55.0 | 3.29e-01 | 98.0% | 96.7% |
| 5054994 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 41.0 | 4.23e-01 | 70.0% | 68.8% |
| 5024203 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.64 | 44.0 | 3.65e-01 | 70.0% | 38.9% |
| 3896484 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.63 | 52.0 | 4.12e-01 | 100.0% | 45.8% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 42.0 | 3.79e-01 | 76.0% | 46.7% |
| 3217638 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 50.0 | 4.43e-01 | 92.0% | 92.0% |
| 4937869 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.61 | 40.0 | 3.46e-01 | 72.0% | 40.0% |
| 3809302 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 40.0 | 3.43e-01 | 76.0% | 40.0% |
| 3507995 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.60 | 43.0 | 2.93e-01 | 94.0% | 18.6% |
| 4130753 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.60 | 47.0 | 2.85e-01 | 86.0% | 91.1% |
| 3288884 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 46.0 | 3.72e-01 | 90.0% | 41.9% |
| 4988427 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.60 | 50.0 | 3.06e-01 | 100.0% | 58.9% |
| 3606814 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.59 | 48.0 | 4.25e-01 | 96.0% | 66.7% |
| 3927894 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.59 | 44.0 | 3.35e-01 | 86.0% | 50.4% |
| 5039400 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.59 | 52.0 | 3.18e-01 | 100.0% | 91.3% |
| 3888254 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 43.0 | 4.40e-01 | 92.0% | 91.1% |
| 4458313 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.58 | 44.0 | 3.58e-01 | 86.0% | 41.0% |
| 3742185 | 2003.1.5.26 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 | 0.58 | 47.0 | 2.91e-01 | 100.0% | 66.8% |
| 5072662 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.58 | 48.0 | 3.55e-01 | 96.0% | 78.5% |
| 5012544 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 43.0 | 3.51e-01 | 86.0% | 41.9% |
| 3420092 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.57 | 41.0 | 3.59e-01 | 78.0% | 50.0% |
| 4987228 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 47.0 | 3.17e-01 | 88.0% | 28.4% |
| 4336488 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 40.0 | 3.63e-01 | 76.0% | 51.4% |
| 3588305 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 42.0 | 3.49e-01 | 84.0% | 43.8% |
| 4961746 | 304.8.1.122 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N | 0.56 | 45.0 | 3.66e-01 | 100.0% | 78.3% |
| 5052285 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 42.0 | 3.40e-01 | 84.0% | 42.9% |
| 3222677 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.56 | 45.0 | 3.10e-01 | 96.0% | 69.5% |
| 3968678 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.56 | 48.0 | 3.50e-01 | 98.0% | 90.0% |
| 3262159 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 40.0 | 3.15e-01 | 84.0% | 55.4% |
| 3477516 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.55 | 47.0 | 2.98e-01 | 98.0% | 22.6% |
| 3603768 | 2484.1.1.24 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 43.0 | 3.35e-01 | 98.0% | 82.1% |
| 3172576 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.55 | 44.0 | 3.58e-01 | 100.0% | 60.9% |
| 4926797 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 41.0 | 3.25e-01 | 92.0% | 36.9% |
| 3864474 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 41.0 | 2.97e-01 | 86.0% | 41.2% |
| 3304346 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 37.0 | 3.38e-01 | 74.0% | 50.0% |
| 3873622 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.54 | 48.0 | 3.17e-01 | 100.0% | 92.4% |
| 3783181 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 43.0 | 3.39e-01 | 88.0% | 43.6% |
| 3924099 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 44.0 | 2.98e-01 | 100.0% | 62.6% |
| 402817 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 39.0 | 3.25e-01 | 84.0% | 64.2% |
| 4458952 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.54 | 44.0 | 3.39e-01 | 100.0% | 47.0% |
| 3937352 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 45.0 | 3.34e-01 | 90.0% | 42.6% |
| 4157358 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 44.0 | 3.79e-01 | 90.0% | 60.3% |
| 4359254 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 38.0 | 3.42e-01 | 76.0% | 48.0% |
| 3590547 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.53 | 43.0 | 3.38e-01 | 98.0% | 60.0% |
| 3718216 | 4051.1.1.0 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz | 0.53 | 39.0 | 3.07e-01 | 86.0% | 72.8% |
| 3435911 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 44.0 | 3.33e-01 | 90.0% | 40.9% |
| 3314422 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 36.0 | 3.31e-01 | 76.0% | 54.3% |
| 3619264 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 42.0 | 3.44e-01 | 90.0% | 51.1% |
| 4234615 | 330.4.1.0 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain | 0.50 | 34.0 | 3.14e-01 | 74.0% | 52.0% |
| 5051613 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 46.0 | 3.42e-01 | 100.0% | 71.2% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 44.0 | 3.85e-01 | 98.0% | 68.0% |
D2
high
residues 58-111
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.72 | 44.0 | 4.51e-01 | 94.4% | 64.7% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.58 | 40.0 | 4.25e-01 | 100.0% | 88.9% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 39.0 | 2.56e-01 | 75.9% | 26.1% |
| 3c6cA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 38.0 | 2.49e-01 | 74.1% | 66.3% |
| 5yvxA00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.56 | 39.0 | 3.83e-01 | 81.5% | 68.3% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.54 | 37.0 | 2.24e-01 | 77.8% | 38.4% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 35.0 | 2.72e-01 | 72.2% | 48.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3616906 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 34.0 | 4.45e-01 | 75.9% | 96.7% |
| 3241160 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 34.0 | 4.08e-01 | 87.0% | 100.0% |
| 167548 | 386.1.1.125 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_16 | 0.57 | 32.0 | 3.77e-01 | 87.0% | 93.5% |
| 3388225 | 857.1.1.0 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like | 0.55 | 40.0 | 3.80e-01 | 92.6% | 66.2% |
| 3723251 | 375.10.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol | 0.54 | 37.0 | 3.45e-01 | 90.7% | 55.7% |
| 3362601 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.52 | 43.0 | 4.10e-01 | 96.3% | 95.4% |
| 3658113 | 857.1.1.16 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › DUF1677 | 0.51 | 43.0 | 4.01e-01 | 96.3% | 90.0% |