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IMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034860
Arc-VirIMGVR_UViG_3300002481_000004-3300002481-JGI24020J35080_100034860
Identity
- Kingdom:
- archaea
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-79
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pmsC00 | 6.10.140.920 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 61.0 | 5.39e-01 | 81.0% | 94.5% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 70.0 | 6.35e-01 | 97.5% | 87.4% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.76 | 62.0 | 5.51e-01 | 87.3% | 78.2% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.74 | 65.0 | 6.05e-01 | 100.0% | 86.1% |
| 3ck6C02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.71 | 49.0 | 4.22e-01 | 70.9% | 59.7% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.71 | 62.0 | 5.48e-01 | 98.7% | 83.1% |
| 7m2wE01 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.70 | 61.0 | 4.12e-01 | 100.0% | 41.9% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.69 | 48.0 | 4.03e-01 | 70.9% | 65.4% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.68 | 42.0 | 4.28e-01 | 70.9% | 62.8% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.66 | 58.0 | 4.71e-01 | 100.0% | 61.0% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 51.0 | 4.18e-01 | 87.3% | 83.9% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.63 | 55.0 | 3.52e-01 | 100.0% | 80.1% |
| 4nqfA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.63 | 54.0 | 4.51e-01 | 98.7% | 71.7% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.63 | 43.0 | 4.18e-01 | 89.9% | 64.4% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 44.0 | 4.29e-01 | 97.5% | 67.0% |
| 5k29A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 42.0 | 3.93e-01 | 70.9% | 100.0% |
| 4l7nA01 | 1.20.142.10 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain | 0.61 | 39.0 | 3.29e-01 | 73.4% | 36.4% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 52.0 | 4.17e-01 | 100.0% | 56.9% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 48.0 | 4.01e-01 | 97.5% | 48.0% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.59 | 40.0 | 3.74e-01 | 83.5% | 55.0% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.58 | 49.0 | 3.82e-01 | 100.0% | 72.7% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 49.0 | 4.07e-01 | 97.5% | 87.3% |
| 2vkhA03 | 1.10.10.1780 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 30.0 | 3.18e-01 | 72.2% | 53.6% |
| 3piwA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 47.0 | 3.92e-01 | 97.5% | 54.5% |
| 6t4hA03 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.56 | 46.0 | 3.52e-01 | 87.3% | 82.0% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.56 | 39.0 | 3.73e-01 | 72.2% | 62.0% |
| 2osaA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.56 | 41.0 | 3.14e-01 | 79.7% | 41.8% |
| 3euaA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 32.0 | 3.47e-01 | 89.9% | 68.8% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.55 | 37.0 | 4.06e-01 | 70.9% | 98.4% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.54 | 40.0 | 3.93e-01 | 79.7% | 86.4% |
| 3fmcC01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 48.0 | 3.23e-01 | 94.9% | 90.7% |
| 2b5dX01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.54 | 45.0 | 2.90e-01 | 96.2% | 55.2% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 38.0 | 3.07e-01 | 75.9% | 40.7% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 47.0 | 4.33e-01 | 98.7% | 89.1% |
| 3msyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 3.26e-01 | 73.4% | 94.6% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.51 | 44.0 | 4.27e-01 | 97.5% | 92.0% |
| 3fkjA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 31.0 | 3.36e-01 | 91.1% | 73.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3225544 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.82 | 60.0 | 5.48e-01 | 75.9% | 90.0% |
| 3993981 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.81 | 63.0 | 4.44e-01 | 82.3% | 39.1% |
| 4293733 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.80 | 56.0 | 5.02e-01 | 72.2% | 89.5% |
| 4129436 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.79 | 55.0 | 4.96e-01 | 72.2% | 91.4% |
| 4982026 | 150.1.1.209 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7121 | 0.79 | 71.0 | 5.85e-01 | 100.0% | 67.1% |
| 3408277 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.77 | 56.0 | 4.90e-01 | 75.9% | 91.3% |
| 3491738 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.77 | 54.0 | 4.96e-01 | 72.2% | 81.8% |
| 4428399 | 632.11.1.10 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › EzrA | 0.77 | 68.0 | 6.12e-01 | 98.7% | 72.7% |
| 3413073 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.74 | 56.0 | 4.95e-01 | 96.2% | 54.2% |
| 3832382 | 5069.1.3.60 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › OST3_OST6 | 0.74 | 51.0 | 4.39e-01 | 70.9% | 55.0% |
| 3290567 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.74 | 65.0 | 5.91e-01 | 97.5% | 90.5% |
| 4591251 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.72 | 58.0 | 5.76e-01 | 98.7% | 83.5% |
| 3406711 | 632.11.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DOCK_N | 0.71 | 61.0 | 6.03e-01 | 100.0% | 91.8% |
| 1310795 | 2002.1.1.17 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEPcase | 0.71 | 65.0 | 3.64e-01 | 98.7% | 23.8% |
| 4679869 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.71 | 59.0 | 5.76e-01 | 98.7% | 84.7% |
| 3883773 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.69 | 62.0 | 4.11e-01 | 100.0% | 64.8% |
| 5005097 | 3710.1.1.0 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain | 0.69 | 54.0 | 4.45e-01 | 82.3% | 91.7% |
| 4972788 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.68 | 58.0 | 5.14e-01 | 100.0% | 65.5% |
| 4336172 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.67 | 60.0 | 3.86e-01 | 94.9% | 50.6% |
| 3449605 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.67 | 58.0 | 5.28e-01 | 98.7% | 91.8% |
| 4300897 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.66 | 46.0 | 3.94e-01 | 73.4% | 72.3% |
| 5024245 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 45.0 | 4.06e-01 | 70.9% | 82.7% |
| 3990182 | 3922.1.1.226 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Fy-3 | 0.66 | 49.0 | 4.37e-01 | 81.0% | 96.5% |
| 3253932 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.64 | 55.0 | 4.83e-01 | 98.7% | 74.4% |
| 3619662 | 192.12.1.3 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 | 0.64 | 43.0 | 4.38e-01 | 70.9% | 75.0% |
| 3180273 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.64 | 55.0 | 4.17e-01 | 100.0% | 68.8% |
| 3706661 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.63 | 53.0 | 5.02e-01 | 98.7% | 78.9% |
| 4597634 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.62 | 53.0 | 5.33e-01 | 98.7% | 95.0% |
| 4947163 | 601.30.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › MMR_HSR1 | 0.61 | 53.0 | 4.27e-01 | 100.0% | 73.8% |
| 3263522 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.60 | 52.0 | 3.96e-01 | 100.0% | 79.5% |
| 3302766 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.60 | 44.0 | 4.45e-01 | 77.2% | 76.2% |
| 3566658 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.60 | 39.0 | 3.99e-01 | 77.2% | 69.3% |
| 5082892 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.59 | 49.0 | 3.96e-01 | 97.5% | 47.6% |
| None | — | 0.58 | 49.0 | 2.95e-01 | 100.0% | 24.5% | |
| 3690688 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 50.0 | 3.83e-01 | 100.0% | 76.9% |
| 3748920 | 206.1.1.51 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PIP49_C | 0.57 | 44.0 | 3.22e-01 | 100.0% | 29.5% |
| 4015806 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.57 | 49.0 | 3.57e-01 | 100.0% | 62.5% |
| 3829773 | 3684.1.1.2 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › BPS1 | 0.57 | 48.0 | 3.53e-01 | 96.2% | 48.4% |
| None | — | 0.55 | 48.0 | 2.76e-01 | 98.7% | 63.6% | |
| 3340833 | 5086.1.1.109 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Chloroplast_duf | 0.55 | 50.0 | 4.80e-01 | 98.7% | 97.8% |
| 3730497 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.54 | 41.0 | 3.73e-01 | 89.9% | 60.0% |
| 3829400 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.52 | 42.0 | 3.90e-01 | 89.9% | 70.9% |
| 4020357 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.52 | 41.0 | 4.14e-01 | 92.4% | 85.0% |
| 4190023 | 7023.1.1.0 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein | 0.51 | 42.0 | 3.76e-01 | 92.4% | 97.4% |