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IMGVR_UViG_3300002481_000051-3300002481-JGI24020J35080_100021724
Arc-VirIMGVR_UViG_3300002481_000051-3300002481-JGI24020J35080_100021724
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-21_82-108_120-133
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gywA02 | 3.30.1120.90 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein | 0.62 | 48.0 | 3.80e-01 | 96.8% | 41.6% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.61 | 47.0 | 3.62e-01 | 83.9% | 75.0% |
| 3c5iD01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 49.0 | 4.63e-01 | 96.8% | 84.2% |
| 1adqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 3.40e-01 | 71.0% | 99.0% |
| 1j7dA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.57 | 44.0 | 3.41e-01 | 83.9% | 79.3% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.57 | 49.0 | 3.08e-01 | 100.0% | 65.8% |
| 5cyxA02 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.55 | 38.0 | 3.18e-01 | 74.2% | 89.8% |
| 5cxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 46.0 | 3.70e-01 | 100.0% | 64.2% |
| 1xzpB00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.55 | 38.0 | 3.02e-01 | 74.2% | 69.5% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.54 | 46.0 | 3.85e-01 | 98.4% | 73.5% |
| 1nw1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 46.0 | 4.08e-01 | 98.4% | 72.9% |
| 1yrvA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 41.0 | 3.17e-01 | 83.9% | 80.4% |
| 1x23B00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.54 | 42.0 | 3.26e-01 | 90.3% | 36.2% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.54 | 46.0 | 3.25e-01 | 96.8% | 72.0% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.53 | 40.0 | 3.30e-01 | 83.9% | 76.6% |
| 5tf2A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 2.84e-01 | 96.8% | 19.2% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 44.0 | 4.11e-01 | 96.8% | 81.9% |
| 1e3hA01 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.52 | 41.0 | 2.82e-01 | 90.3% | 77.4% |
| 3hx1B00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.52 | 40.0 | 3.39e-01 | 83.9% | 64.2% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 40.0 | 3.44e-01 | 87.1% | 51.4% |
| 1wr2A01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 44.0 | 3.35e-01 | 100.0% | 80.9% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 41.0 | 3.75e-01 | 100.0% | 66.7% |
| 5nl8A00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.51 | 39.0 | 2.91e-01 | 88.7% | 83.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.99 | 81.0 | 6.12e-01 | 83.9% | 99.2% |
| 4951562 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 44.0 | 3.77e-01 | 71.0% | 88.0% |
| 3945059 | 9.1.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE | 0.61 | 48.0 | 4.03e-01 | 85.5% | 52.4% |
| 3464885 | 331.3.1.1 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 | 0.58 | 49.0 | 3.81e-01 | 100.0% | 56.7% |
| 3761723 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.56 | 48.0 | 3.36e-01 | 96.8% | 32.0% |
| 4943184 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 41.0 | 3.39e-01 | 79.0% | 57.3% |
| 3255320 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.55 | 47.0 | 3.38e-01 | 96.8% | 35.1% |
| 3834895 | 4096.1.1.1 ↗ | a+b two layers › NAP-like › NAP-like › NAP-like › NAP | 0.55 | 47.0 | 3.25e-01 | 96.8% | 29.8% |
| 3496732 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.55 | 46.0 | 2.74e-01 | 96.8% | 13.5% |
| 378323 | 517.2.1.1 ↗ | beta barrels › CBF-like › TraF › TraF › TrbI | 0.55 | 46.0 | 3.31e-01 | 98.4% | 35.2% |
| 2048193 | 12.6.1.1 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_65C | 0.54 | 37.0 | 3.53e-01 | 87.1% | 59.2% |
| 5070373 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.54 | 49.0 | 3.36e-01 | 100.0% | 95.2% |
| 3615273 | 59.1.1.1 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5 | 0.54 | 47.0 | 3.45e-01 | 100.0% | 45.3% |
| 4978318 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.54 | 39.0 | 3.22e-01 | 79.0% | 53.3% |
| 3502724 | 922.1.1.29 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › PLAC | 0.53 | 40.0 | 3.12e-01 | 100.0% | 35.2% |
| 4969105 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.52 | 44.0 | 3.09e-01 | 100.0% | 90.2% |
| 5035471 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.52 | 46.0 | 3.07e-01 | 100.0% | 82.3% |
| 4947279 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.52 | 42.0 | 3.38e-01 | 91.9% | 65.6% |
| 4947681 | 206.1.3.26 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_5 | 0.51 | 45.0 | 3.00e-01 | 100.0% | 83.2% |
| 3286168 | 881.1.1.27 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF7373_C | 0.50 | 44.0 | 3.33e-01 | 100.0% | 61.3% |
| 4938115 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.50 | 34.0 | 3.32e-01 | 79.0% | 60.8% |
D2
medium
residues 22-81_109-119
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x3gA00 | 3.30.70.1910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.03e-01 | 70.4% | 50.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988100 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 66.0 | 5.33e-01 | 100.0% | 79.0% |
| 3263855 | 300.1.1.2 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DNase_II | 0.53 | 41.0 | 3.25e-01 | 85.9% | 80.0% |
| 139956 | 304.8.1.16 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › 117-like_vir | 0.52 | 35.0 | 3.03e-01 | 70.4% | 50.9% |
| 3614788 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.51 | 41.0 | 2.71e-01 | 94.4% | 70.8% |
| 4383522 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 38.0 | 2.39e-01 | 80.3% | 35.0% |