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IMGVR_UViG_3300002484_000954-3300002484-JGI25129J35166_10019886

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300002484_000954-3300002484-JGI25129J35166_10019886 ↗
Kingdom:: archaea

Quality

72.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-129

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zpyA00	6.10.140.1960	Special › Helix non-globular › Helix Hairpins ›	0.73	28.0	3.29e-01	82.3%	48.4%
2fcwA00	1.20.81.10	Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain	0.69	36.0	3.87e-01	84.7%	59.4%
3ezqA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.68	48.0	4.97e-01	84.7%	78.3%
4aflA00	6.10.140.1740	Special › Helix non-globular › Helix Hairpins ›	0.67	30.0	3.32e-01	93.5%	52.9%
2i0mA02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.67	28.0	3.06e-01	83.1%	45.5%
4w4kA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.65	33.0	4.00e-01	82.3%	74.4%
4iloA00	1.10.287.1490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.56	33.0	2.62e-01	81.5%	30.1%
1t33A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	31.0	2.93e-01	83.9%	42.4%
4fm3A00	1.20.1270.390	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.56	37.0	4.15e-01	91.1%	87.4%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.52	37.0	3.62e-01	73.4%	81.8%
2fzlA02	6.10.140.1180	Special › Helix non-globular › Helix Hairpins ›	0.50	23.0	3.11e-01	84.7%	83.9%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4475943	192.7.1.3 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N	0.85	30.0	3.63e-01	100.0%	49.4%
4022048	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.70	34.0	3.05e-01	78.2%	33.1%
3923557	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.68	34.0	2.89e-01	79.0%	30.0%
4996194	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.68	27.0	3.19e-01	80.6%	52.2%
3553813	3291.1.1.82 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING	0.67	34.0	3.40e-01	80.6%	48.0%
3215342	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.65	32.0	3.58e-01	81.5%	60.0%
3412574	3291.1.1.82 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING	0.64	32.0	3.21e-01	80.6%	46.2%
5037413	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.63	33.0	3.00e-01	82.3%	38.8%
4033595	308.2.1.0 ↗	a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain	0.62	46.0	4.44e-01	88.7%	67.9%
3386973	5086.1.1.84 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND	0.62	32.0	3.73e-01	78.2%	68.9%
3719307	3291.1.1.0 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related	0.60	37.0	3.15e-01	76.6%	37.5%
3711734	3755.3.1.297 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9	0.60	33.0	2.99e-01	80.6%	40.6%
4209793	1203.1.2.0 ↗	alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2	0.58	32.0	2.75e-01	81.5%	33.2%
4031283	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.54	33.0	3.09e-01	80.6%	49.3%
3286734	4953.1.1.0 ↗	beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like	0.54	38.0	4.19e-01	79.0%	89.0%
None	—		0.53	41.0	3.17e-01	81.5%	64.7%
3175421	3922.1.1.312 ↗	alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF30554	0.52	36.0	3.52e-01	83.1%	64.3%
4395020	192.7.1.3 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N	0.51	35.0	3.84e-01	98.4%	87.0%
3264568	3748.1.1.3 ↗	extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C	0.51	33.0	3.58e-01	77.4%	78.1%
4351483	192.7.1.3 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N	0.51	37.0	3.98e-01	100.0%	88.6%
3968781	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.50	32.0	3.02e-01	79.0%	53.8%