Back to structures

IMGVR_UViG_3300002484_001658-3300002484-JGI25129J35166_100094116

Arc-Vir

IMGVR_UViG_3300002484_001658-3300002484-JGI25129J35166_100094116

Quality

86.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-107
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.05e-01 100.0% 67.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.68 50.0 4.94e-01 98.4% 72.7%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.95e-01 100.0% 88.0%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.84e-01 100.0% 86.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.56e-01 100.0% 89.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 41.0 4.52e-01 98.4% 89.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.10e-01 100.0% 65.2%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 4.47e-01 100.0% 68.8%
4k17B01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.98e-01 90.2% 98.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.76e-01 100.0% 94.5%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.37e-01 91.8% 100.0%
3b0xA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 46.0 3.82e-01 83.6% 71.4%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 3.69e-01 70.5% 91.3%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.58 52.0 4.30e-01 100.0% 57.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.56e-01 100.0% 89.7%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 45.0 4.22e-01 100.0% 67.9%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 47.0 4.56e-01 100.0% 80.3%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 47.0 3.30e-01 96.7% 65.2%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 42.0 3.24e-01 85.2% 71.1%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.56 46.0 2.87e-01 100.0% 36.6%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.56 38.0 3.65e-01 82.0% 62.3%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 46.0 3.69e-01 98.4% 84.7%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 2.88e-01 100.0% 31.2%
1awjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.10e-01 98.4% 71.4%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 3.71e-01 93.4% 78.7%
2a5hA03 6.20.120.40 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 31.0 3.15e-01 91.8% 54.8%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 41.0 4.24e-01 100.0% 96.3%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.81e-01 91.8% 23.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.20e-01 100.0% 85.5%
4my2A02 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.53 29.0 2.59e-01 72.1% 31.9%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 45.0 3.07e-01 98.4% 51.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.53 43.0 4.33e-01 100.0% 92.1%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 44.0 3.57e-01 100.0% 88.5%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 44.0 4.35e-01 100.0% 94.1%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 42.0 3.95e-01 91.8% 84.0%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.11e-01 96.7% 61.0%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.02e-01 98.4% 50.2%
3vhxF00 2.60.40.4330 Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain 0.51 31.0 2.66e-01 77.0% 37.3%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.41e-01 100.0% 85.1%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.11e-01 100.0% 42.4%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.51e-01 98.4% 98.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 4.13e-01 100.0% 96.6%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 40.0 4.11e-01 98.4% 98.2%
1n9pA00 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.50 44.0 3.11e-01 100.0% 36.5%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 41.0 4.13e-01 100.0% 95.1%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.50 41.0 3.46e-01 100.0% 87.6%
3cp7B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 40.0 3.39e-01 98.4% 51.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 43.0 4.18e-01 100.0% 87.1%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 54.0 5.38e-01 100.0% 75.0%
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.52e-01 100.0% 89.1%
5024227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.31e-01 100.0% 84.1%
5058457 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 49.0 4.81e-01 100.0% 72.3%
3260945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 54.0 5.53e-01 100.0% 91.7%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.67 48.0 5.02e-01 100.0% 85.5%
4982354 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.65 51.0 5.09e-01 100.0% 83.1%
5031673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.71e-01 100.0% 65.7%
3810292 3792.1.1.2 beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.64 42.0 3.99e-01 100.0% 56.0%
4044269 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.63 47.0 4.52e-01 100.0% 71.4%
3832879 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 52.0 4.11e-01 100.0% 45.6%
4890012 2484.1.1.209 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › IN_DBD_C 0.62 42.0 3.31e-01 93.4% 32.8%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.62 46.0 4.87e-01 98.4% 98.1%
3323984 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.62 48.0 3.50e-01 100.0% 29.2%
4929875 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 45.0 3.83e-01 100.0% 49.0%
3775000 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.84e-01 95.1% 79.3%
3991693 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 4.19e-01 86.9% 68.6%
4083915 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 48.0 4.52e-01 100.0% 73.3%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.59 42.0 4.39e-01 96.7% 83.6%
4027422 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 42.0 4.36e-01 100.0% 83.6%
3493556 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.06e-01 95.1% 71.8%
3513810 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.70e-01 91.8% 81.5%
3396896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.19e-01 98.4% 69.3%
4994895 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 49.0 4.57e-01 100.0% 76.2%
3247995 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.57 41.0 3.98e-01 98.4% 67.1%
3256547 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.98e-01 91.8% 84.0%
3946522 9.1.1.36 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3833 0.55 46.0 3.55e-01 98.4% 87.1%
3939128 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.82e-01 95.1% 72.7%
3214129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.73e-01 98.4% 55.2%
2552766 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 46.0 3.50e-01 96.7% 89.0%
4581110 2003.1.2.60 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO, NAD_binding_8 0.55 46.0 3.04e-01 96.7% 49.5%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 44.0 4.51e-01 100.0% 93.3%
3413864 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.54 44.0 3.29e-01 100.0% 33.9%
2846268 2003.1.2.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 45.0 3.28e-01 96.7% 87.3%
3521739 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 43.0 3.96e-01 100.0% 65.9%
3742833 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.59e-01 86.9% 18.3%
3432796 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 40.0 3.68e-01 82.0% 85.0%
3948068 4023.1.1.3 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DUF7146 0.53 36.0 2.94e-01 70.5% 66.4%
3207525 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 44.0 2.90e-01 98.4% 50.8%
3907870 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 42.0 3.96e-01 100.0% 70.9%
4587235 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.53 44.0 3.67e-01 96.7% 88.7%
3494765 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.53 42.0 2.95e-01 100.0% 25.5%
3924338 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 42.0 4.07e-01 100.0% 80.0%
2717779 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 43.0 3.93e-01 100.0% 69.5%
5059545 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 41.0 2.67e-01 88.5% 21.6%
3619599 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 42.0 3.99e-01 100.0% 74.7%
3942998 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.52 45.0 4.36e-01 100.0% 100.0%
3498145 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 43.0 4.29e-01 100.0% 89.1%
4013462 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 44.0 2.93e-01 100.0% 37.2%
5002890 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 45.0 3.77e-01 96.7% 60.0%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 41.0 4.02e-01 98.4% 78.6%
3723053 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 44.0 2.88e-01 98.4% 45.6%
4960051 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 44.0 3.23e-01 98.4% 35.1%
3630302 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 43.0 3.66e-01 100.0% 64.5%
3754362 3426.1.1.0 beta meanders › Telethonin › Telethonin › Telethonin 0.52 37.0 3.81e-01 77.0% 91.7%
5063004 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 44.0 4.32e-01 98.4% 93.8%
1833392 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.51 43.0 3.28e-01 98.4% 91.9%
3934615 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.80e-01 93.4% 25.1%
3451989 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 41.0 2.73e-01 98.4% 99.4%
5020005 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.50 41.0 3.87e-01 91.8% 94.7%
4948250 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.50 39.0 3.87e-01 100.0% 83.1%
3169468 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 40.0 2.48e-01 91.8% 23.0%
3214302 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 3.63e-01 100.0% 61.7%