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IMGVR_UViG_3300002484_001677-3300002484-JGI25129J35166_10014223
Arc-VirIMGVR_UViG_3300002484_001677-3300002484-JGI25129J35166_10014223
Identity
- Kingdom:
- archaea
Quality
73.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-70
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 48.0 | 4.92e-01 | 73.9% | 83.1% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 43.0 | 4.27e-01 | 84.1% | 79.5% |
| 4a2lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 46.0 | 3.00e-01 | 95.7% | 94.2% |
| 2f9zC00 | 3.30.1330.200 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.53 | 38.0 | 2.95e-01 | 75.4% | 40.3% |
| 3ab1B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 42.0 | 2.93e-01 | 84.1% | 35.8% |
| 6b4oA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 3.40e-01 | 84.1% | 48.3% |
| 1aogA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 3.37e-01 | 84.1% | 47.1% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 46.0 | 3.02e-01 | 97.1% | 94.6% |
| 4paaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 41.0 | 2.79e-01 | 84.1% | 41.6% |
| 6qp9B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.70e-01 | 94.2% | 89.6% |
| 2g8sB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.50 | 44.0 | 2.82e-01 | 97.1% | 96.3% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 43.0 | 2.76e-01 | 92.8% | 78.7% |
| 5ygqA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 2.75e-01 | 84.1% | 34.7% |
| 3nksA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 39.0 | 2.37e-01 | 84.1% | 51.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3308207 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.63 | 45.0 | 3.02e-01 | 75.4% | 40.0% |
| 3597789 | 219.1.1.4 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 | 0.60 | 51.0 | 3.38e-01 | 98.6% | 70.6% |
| 3241867 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.59 | 33.0 | 3.30e-01 | 98.6% | 54.3% |
| 4458172 | 391.1.2.2 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › PSP94 | 0.58 | 30.0 | 3.89e-01 | 95.7% | 90.0% |
| 4959359 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 34.0 | 2.78e-01 | 71.0% | 33.3% |
| 3999968 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.58 | 31.0 | 3.96e-01 | 97.1% | 92.5% |
| 3731080 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.57 | 49.0 | 3.07e-01 | 95.7% | 85.6% |
| 3427497 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.56 | 43.0 | 3.52e-01 | 84.1% | 46.7% |
| 3883165 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.55 | 44.0 | 3.95e-01 | 91.3% | 75.0% |
| None | — | 0.54 | 41.0 | 2.48e-01 | 79.7% | 37.7% | |
| 3514906 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.54 | 45.0 | 3.42e-01 | 98.6% | 44.7% |
| None | — | 0.53 | 42.0 | 2.82e-01 | 84.1% | 50.2% | |
| 4578780 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.53 | 30.0 | 3.48e-01 | 100.0% | 92.5% |
| None | — | 0.53 | 41.0 | 2.86e-01 | 84.1% | 73.2% | |
| 3313139 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.53 | 44.0 | 3.43e-01 | 100.0% | 69.7% |
| 5040609 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 2.83e-01 | 100.0% | 95.7% |
| 3507146 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.52 | 42.0 | 4.02e-01 | 98.6% | 76.5% |
| 3278208 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.51 | 44.0 | 2.73e-01 | 97.1% | 87.8% |
| 3593467 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 45.0 | 2.83e-01 | 98.6% | 94.0% |
| 3990220 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 45.0 | 2.87e-01 | 98.6% | 89.2% |
| 3276359 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 44.0 | 2.79e-01 | 97.1% | 91.5% |
D2
medium
residues 96-160
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yjnA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.72 | 56.0 | 4.13e-01 | 83.1% | 48.4% |
| 7byjA01 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.60 | 49.0 | 4.14e-01 | 93.8% | 65.8% |
| 2janA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.60 | 37.0 | 3.24e-01 | 70.8% | 39.6% |
| 1ohcA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.56 | 46.0 | 3.58e-01 | 98.5% | 50.9% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 41.0 | 4.20e-01 | 81.5% | 89.1% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.55 | 45.0 | 4.13e-01 | 98.5% | 71.3% |
| 2cfqA02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 46.0 | 3.32e-01 | 98.5% | 78.8% |
| 4c0aA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.54 | 39.0 | 3.75e-01 | 84.6% | 65.4% |
| 1f1mA00 | 1.20.120.240 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 | 0.52 | 35.0 | 2.68e-01 | 75.4% | 28.4% |
| 2vugA04 | 1.20.58.2250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.91e-01 | 96.9% | 72.2% |
| 8eefB01 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.51 | 41.0 | 3.42e-01 | 93.8% | 80.2% |
| 4nrvA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 36.0 | 2.92e-01 | 80.0% | 43.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5080963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 71.0 | 6.50e-01 | 96.9% | 83.5% |
| 4128040 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 65.0 | 6.19e-01 | 98.5% | 82.7% |
| 3268181 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.67 | 53.0 | 3.37e-01 | 87.7% | 26.7% |
| 5071075 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.66 | 55.0 | 5.07e-01 | 93.8% | 82.4% |
| 4985160 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 54.0 | 4.71e-01 | 93.8% | 72.4% |
| 2035564 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.65 | 53.0 | 5.25e-01 | 98.5% | 85.9% |
| 3510591 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.65 | 50.0 | 5.39e-01 | 87.7% | 100.0% |
| 3790320 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.64 | 51.0 | 5.16e-01 | 96.9% | 90.8% |
| 3771267 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.64 | 50.0 | 4.89e-01 | 92.3% | 80.0% |
| 4112039 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.63 | 44.0 | 4.90e-01 | 76.9% | 96.0% |
| 4955406 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.63 | 53.0 | 5.05e-01 | 96.9% | 91.1% |
| 3546908 | 604.39.1.12 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › VTT_dom | 0.63 | 51.0 | 3.58e-01 | 90.8% | 60.0% |
| 3979666 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.61 | 50.0 | 5.19e-01 | 92.3% | 100.0% |
| 3479791 | 176.1.1.0 ↗ | alpha arrays › Annexin › Annexin › Annexin | 0.61 | 42.0 | 3.78e-01 | 80.0% | 51.1% |
| 4043832 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.59 | 50.0 | 3.24e-01 | 100.0% | 38.5% |
| 4007664 | 101.1.1.58 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 | 0.59 | 49.0 | 4.85e-01 | 93.8% | 85.7% |
| 4844427 | 184.1.1.2 ↗ | alpha arrays › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › Nucleoside phosphorylase/phosphoribosyltransferase-N › COMMD1_N | 0.58 | 50.0 | 4.11e-01 | 100.0% | 52.5% |
| 3286271 | 7105.1.1.1 ↗ | alpha arrays › Helical domain in class 2 OLD protein › Helical domain in class 2 OLD protein › Helical domain in class 2 OLD protein › DUF4276 | 0.55 | 40.0 | 3.76e-01 | 80.0% | 81.2% |
| 3231116 | 5059.1.1.17 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TMEM234 | 0.54 | 42.0 | 3.84e-01 | 90.8% | 95.8% |
| 3246285 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.52 | 39.0 | 3.77e-01 | 100.0% | 72.0% |
| 3063342 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.51 | 42.0 | 2.80e-01 | 93.8% | 71.5% |
| 4025615 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.51 | 40.0 | 3.25e-01 | 93.8% | 57.2% |
| 4992540 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 43.0 | 4.25e-01 | 96.9% | 98.6% |
| 3604415 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.50 | 35.0 | 3.26e-01 | 73.8% | 75.3% |