Back to structures

IMGVR_UViG_3300002485_000354-3300002485-C687J35088_1000242814

Arc-Vir

IMGVR_UViG_3300002485_000354-3300002485-C687J35088_1000242814

Quality

84.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-73
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ywrA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.74 61.0 3.98e-01 92.0% 23.7%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.74 53.0 3.69e-01 76.0% 49.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 4.15e-01 78.0% 88.4%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 53.0 3.86e-01 80.0% 98.4%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 55.0 3.75e-01 92.0% 65.9%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 4.19e-01 76.0% 97.3%
1id3B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.65 54.0 4.77e-01 100.0% 60.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 3.81e-01 94.0% 63.6%
3jw4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 3.93e-01 92.0% 82.0%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.63 44.0 3.19e-01 94.0% 23.9%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.63 45.0 4.24e-01 76.0% 100.0%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.63 53.0 4.35e-01 96.0% 57.4%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.63 49.0 4.27e-01 84.0% 58.7%
2rkhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.85e-01 78.0% 88.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 3.88e-01 94.0% 81.5%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.61 48.0 3.20e-01 90.0% 33.8%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.60 51.0 3.73e-01 100.0% 48.6%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.78e-01 84.0% 50.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 49.0 4.23e-01 94.0% 62.0%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.57 48.0 3.30e-01 94.0% 31.7%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 3.62e-01 84.0% 51.7%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.72e-01 82.0% 95.9%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.34e-01 92.0% 69.5%
5b7cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 48.0 3.65e-01 94.0% 91.0%
5i0hA02 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 42.0 3.79e-01 88.0% 79.2%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.53e-01 84.0% 53.1%
4huqS00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.54 45.0 3.25e-01 100.0% 48.8%
5hmpB02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 3.83e-01 86.0% 79.7%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.64e-01 82.0% 59.7%
1ze0A02 1.10.4070.10 Mainly Alpha › Orthogonal Bundle › putative redox-enzyme maturation protein fold › putative redox-enzyme maturation protein domain 0.53 44.0 3.87e-01 96.0% 84.6%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.67e-01 94.0% 58.4%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.44e-01 84.0% 81.0%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.51e-01 98.0% 67.3%
2r44A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 2.89e-01 92.0% 74.3%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.57e-01 100.0% 78.3%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3644046 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.81 59.0 5.37e-01 80.0% 60.0%
3213629 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.76 46.0 2.80e-01 96.0% 9.7%
5072968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 50.0 4.60e-01 70.0% 100.0%
3596846 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.75 55.0 3.84e-01 100.0% 26.9%
4668436 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.74 52.0 4.53e-01 74.0% 89.3%
5032090 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.73 52.0 4.66e-01 76.0% 95.7%
5005181 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 51.0 3.48e-01 74.0% 72.0%
4395667 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 4.08e-01 70.0% 90.0%
5022395 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.71 51.0 3.51e-01 76.0% 49.7%
5031879 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 4.08e-01 76.0% 71.6%
5039516 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 50.0 4.16e-01 76.0% 94.1%
4948727 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.70 49.0 4.44e-01 76.0% 95.7%
5044919 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 50.0 4.44e-01 78.0% 94.5%
4997796 2006.1.6.45 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 0.69 49.0 3.03e-01 76.0% 14.5%
4947296 101.1.2.905 alpha arrays › HTH › HTH › winged helix domain › DUF4443 0.68 50.0 4.37e-01 78.0% 96.0%
2390768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 48.0 3.93e-01 76.0% 68.8%
3442533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.67 48.0 3.62e-01 76.0% 70.8%
5055888 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.67 46.0 4.09e-01 74.0% 89.3%
4985673 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 46.0 3.90e-01 76.0% 86.7%
5035389 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 45.0 3.83e-01 72.0% 88.2%
4153305 192.7.1.68 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › UPF0182 0.66 49.0 3.35e-01 84.0% 22.2%
4535565 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 53.0 4.32e-01 94.0% 47.0%
3739470 192.2.1.31 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 0.65 51.0 3.82e-01 92.0% 82.8%
5006346 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.64 46.0 3.76e-01 76.0% 71.6%
5066761 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.64 54.0 3.68e-01 94.0% 40.0%
3532208 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.62 51.0 3.53e-01 94.0% 71.9%
5070233 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 42.0 3.63e-01 74.0% 67.8%
3249793 5001.1.1.80 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Dicty_CAR 0.62 53.0 3.35e-01 100.0% 63.4%
4288623 101.1.1.390 alpha arrays › HTH › HTH › Three-helical HTH › PF27054 0.62 51.0 3.52e-01 94.0% 37.7%
5000448 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.62 54.0 3.57e-01 98.0% 95.7%
5030996 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.05e-01 100.0% 94.2%
3815453 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.61 42.0 3.60e-01 76.0% 76.7%
5000830 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.94e-01 88.0% 98.9%
2488339 235.1.1.6 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.60 51.0 3.73e-01 100.0% 48.6%
4938492 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.19e-01 92.0% 92.5%
4181610 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.76e-01 94.0% 73.9%
3605428 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.60 49.0 3.18e-01 92.0% 77.3%
3593719 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.59 50.0 3.47e-01 98.0% 61.1%
1721529 101.1.2.114 alpha arrays › HTH › HTH › winged helix domain › RE_AlwI 0.59 46.0 3.29e-01 98.0% 27.2%
3805839 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.59 41.0 3.55e-01 76.0% 81.2%
3931554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 2.98e-01 74.0% 53.3%
4024039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.68e-01 92.0% 97.1%
4352407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 41.0 3.77e-01 74.0% 88.6%
3598773 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 49.0 3.25e-01 98.0% 63.2%
3221366 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.58 43.0 4.18e-01 84.0% 96.7%
4940103 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 4.24e-01 94.0% 98.6%
4456623 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.58 48.0 3.25e-01 94.0% 67.9%
3808197 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.58 40.0 3.03e-01 76.0% 49.3%
5073598 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.58 47.0 3.90e-01 98.0% 50.0%
None 0.58 41.0 2.38e-01 78.0% 15.8%
5048340 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.92e-01 88.0% 97.6%
4968451 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.43e-01 92.0% 47.7%
4627782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.37e-01 72.0% 82.4%
3660862 246.2.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.57 46.0 2.97e-01 90.0% 89.8%
4977342 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 38.0 3.89e-01 72.0% 80.0%
4928163 2003.1.5.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_2 0.56 46.0 3.02e-01 100.0% 46.2%
4988334 101.1.2.913 alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.56 41.0 3.54e-01 84.0% 88.9%
3984604 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.56 46.0 3.77e-01 96.0% 49.5%
5010704 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 3.22e-01 88.0% 46.4%
3956211 101.19.1.1 alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C 0.55 39.0 3.63e-01 80.0% 62.9%
4933710 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 48.0 2.83e-01 98.0% 31.4%
5075915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.58e-01 90.0% 95.3%
3980981 101.19.1.1 alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C 0.53 40.0 3.60e-01 86.0% 58.7%
4927722 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.53 41.0 3.44e-01 100.0% 70.0%
5038174 242.2.1.0 a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like 0.51 35.0 3.51e-01 78.0% 85.5%
3339900 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.50 44.0 3.20e-01 100.0% 81.4%