←Back to structures
IMGVR_UViG_3300002519_000240-3300002519-JGI25130J35507_100064219
Arc-VirIMGVR_UViG_3300002519_000240-3300002519-JGI25130J35507_100064219
Identity
- Kingdom:
- archaea
Quality
93.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-68
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.55 | 47.0 | 3.90e-01 | 100.0% | 96.7% |
| 7x3hA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 38.0 | 3.15e-01 | 75.4% | 80.2% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 38.0 | 3.23e-01 | 76.9% | 63.6% |
| 2uv8A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 38.0 | 2.29e-01 | 78.5% | 70.5% |
| 2ewlA00 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 32.0 | 3.40e-01 | 73.8% | 71.4% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 35.0 | 3.09e-01 | 86.2% | 44.4% |
| 4o1nD01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 35.0 | 3.03e-01 | 76.9% | 60.9% |
| 4dqnA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.50 | 34.0 | 2.68e-01 | 73.8% | 91.8% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3415859 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.58 | 34.0 | 3.78e-01 | 78.5% | 80.0% |
| 3695719 | 3080.1.1.2 ↗ | a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Vps62 | 0.57 | 47.0 | 3.39e-01 | 100.0% | 67.7% |
| 4833628 | 3143.1.1.2 ↗ | alpha complex topology › Rift Valley fever virus nucleocapsid protein-related › Rift Valley fever virus nucleocapsid protein-related › Papaya mosaic virus capsid protein › Poty_coat | 0.54 | 41.0 | 3.22e-01 | 87.7% | 46.5% |
| 3782077 | 223.2.1.8 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin | 0.54 | 40.0 | 3.21e-01 | 86.2% | 65.8% |
| 4984037 | 2484.4.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co | 0.51 | 40.0 | 3.18e-01 | 87.7% | 51.7% |
| 3908996 | 3687.1.1.1 ↗ | alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › FAD_binding_1 | 0.51 | 40.0 | 3.43e-01 | 93.8% | 98.4% |
| 4092509 | 3585.1.1.0 ↗ | a+b two layers › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain › DNA polymerase III C-terminal domain | 0.51 | 37.0 | 3.68e-01 | 80.0% | 100.0% |
| 3519451 | 10.1.1.4 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin | 0.51 | 43.0 | 3.39e-01 | 96.9% | 69.0% |