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IMGVR_UViG_3300002519_000240-3300002519-JGI25130J35507_10006426
Arc-VirIMGVR_UViG_3300002519_000240-3300002519-JGI25130J35507_10006426
Identity
- Kingdom:
- archaea
Quality
67.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-173
Domain cluster:
rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00370__D51-199
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14464.12 best | Prok-JAB | 30.2 | 4.80e-07 | 62.8% | 34.2% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4owpB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.78 | 68.0 | 6.98e-01 | 91.9% | 94.0% |
| 6fnnB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.75 | 61.0 | 6.61e-01 | 85.5% | 100.0% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.74 | 61.0 | 6.52e-01 | 89.0% | 100.0% |
| 4f7oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.72 | 65.0 | 5.76e-01 | 94.8% | 72.3% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.71 | 62.0 | 6.10e-01 | 91.9% | 89.4% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.69 | 48.0 | 5.47e-01 | 84.9% | 95.2% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.66 | 22.0 | 3.04e-01 | 75.0% | 56.2% |
| 2znrA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.66 | 59.0 | 5.91e-01 | 97.7% | 94.9% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 22.0 | 3.49e-01 | 85.5% | 93.8% |
| 1r5tA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.55 | 41.0 | 4.47e-01 | 82.0% | 95.0% |
| 1wsrA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.55 | 25.0 | 3.26e-01 | 87.2% | 76.9% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 20.0 | 3.18e-01 | 87.8% | 87.3% |
| 3girA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.53 | 24.0 | 3.18e-01 | 87.8% | 77.9% |
| 3q48A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 25.0 | 3.43e-01 | 87.8% | 89.2% |
| 1ym5A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 35.0 | 3.64e-01 | 79.7% | 72.2% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 28.0 | 3.49e-01 | 75.0% | 89.6% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.51 | 26.0 | 2.92e-01 | 86.0% | 60.6% |
| 3ednA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 33.0 | 3.70e-01 | 79.1% | 85.1% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068304 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.81 | 66.0 | 7.04e-01 | 90.1% | 96.0% |
| 3590544 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.80 | 64.0 | 6.92e-01 | 87.2% | 97.3% |
| 3827995 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.79 | 70.0 | 5.55e-01 | 91.9% | 58.4% |
| 4646372 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.79 | 73.0 | 6.58e-01 | 97.1% | 77.8% |
| 4996288 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.79 | 60.0 | 6.65e-01 | 87.8% | 99.3% |
| 3598926 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.79 | 69.0 | 5.76e-01 | 91.9% | 66.1% |
| 3479355 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.79 | 69.0 | 6.14e-01 | 91.9% | 78.3% |
| 4934192 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.78 | 61.0 | 6.72e-01 | 89.0% | 99.3% |
| 5053690 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.78 | 66.0 | 7.00e-01 | 89.5% | 99.4% |
| 3713859 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.78 | 68.0 | 6.01e-01 | 91.9% | 79.9% |
| 3719681 | 1008.1.1.99 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › JAB | 0.78 | 73.0 | 6.29e-01 | 100.0% | 74.5% |
| 3378032 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.77 | 68.0 | 6.55e-01 | 93.0% | 97.9% |
| 4116968 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.77 | 63.0 | 6.77e-01 | 87.8% | 97.3% |
| 3797466 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.77 | 68.0 | 6.42e-01 | 91.9% | 94.0% |
| 4960299 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.77 | 67.0 | 6.86e-01 | 90.7% | 95.8% |
| 3996565 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.77 | 69.0 | 5.98e-01 | 94.8% | 75.3% |
| 3466416 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.77 | 67.0 | 6.23e-01 | 91.9% | 91.4% |
| 3679339 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.76 | 66.0 | 6.72e-01 | 90.1% | 97.6% |
| 5049198 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.76 | 66.0 | 6.75e-01 | 90.1% | 95.7% |
| 3705136 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.76 | 69.0 | 5.89e-01 | 94.8% | 76.8% |
| 5050076 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.76 | 71.0 | 6.74e-01 | 100.0% | 99.0% |
| 4997258 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.76 | 64.0 | 6.76e-01 | 89.0% | 98.1% |
| 5081359 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.76 | 62.0 | 6.26e-01 | 90.7% | 86.5% |
| 4060749 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.76 | 66.0 | 5.23e-01 | 91.9% | 55.9% |
| 3501627 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.75 | 65.0 | 6.27e-01 | 91.3% | 93.3% |
| 2491443 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.75 | 66.0 | 5.80e-01 | 92.4% | 99.6% |
| 3635387 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.75 | 65.0 | 5.89e-01 | 92.4% | 99.6% |
| 4946921 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.75 | 67.0 | 6.73e-01 | 95.3% | 95.4% |
| 3732315 | 2492.1.1.10 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.75 | 65.0 | 5.67e-01 | 91.9% | 98.0% |
| 5041620 | 2492.1.1.18 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB | 0.74 | 65.0 | 5.87e-01 | 91.3% | 84.0% |
| 3740761 | 2492.1.1.4 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.74 | 65.0 | 5.94e-01 | 91.9% | 84.1% |
| 4027959 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.74 | 65.0 | 5.64e-01 | 92.4% | 86.7% |
| 3462526 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.73 | 63.0 | 5.91e-01 | 91.3% | 98.1% |
| 3666747 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.73 | 53.0 | 5.72e-01 | 73.8% | 87.6% |
| 3610562 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.73 | 63.0 | 5.62e-01 | 90.7% | 83.8% |
| 5051278 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.73 | 65.0 | 6.29e-01 | 94.2% | 94.7% |
| 3240882 | 2492.1.1.11 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 | 0.72 | 65.0 | 5.64e-01 | 95.3% | 99.2% |
| 3663319 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.72 | 63.0 | 6.05e-01 | 91.9% | 81.5% |
| 4342104 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.72 | 63.0 | 6.16e-01 | 91.9% | 85.4% |
| 3186542 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.72 | 62.0 | 5.70e-01 | 91.9% | 78.2% |
| 5053264 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.71 | 66.0 | 6.62e-01 | 100.0% | 97.1% |
| 4996952 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.71 | 65.0 | 6.43e-01 | 96.5% | 95.6% |
| 3438031 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.70 | 65.0 | 6.12e-01 | 100.0% | 91.9% |
| 5050918 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.70 | 63.0 | 5.97e-01 | 97.1% | 99.5% |
| 5052468 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.69 | 58.0 | 6.06e-01 | 89.0% | 95.6% |
| 3595726 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.69 | 64.0 | 5.88e-01 | 100.0% | 93.6% |
| 1687168 | 2492.1.1.26 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like | 0.68 | 58.0 | 5.73e-01 | 90.1% | 87.5% |
| 4363048 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.68 | 46.0 | 5.22e-01 | 84.9% | 90.8% |
| 3484057 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.67 | 60.0 | 6.07e-01 | 95.9% | 100.0% |
| 4280109 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.67 | 46.0 | 5.26e-01 | 85.5% | 94.4% |
| 3449835 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.67 | 60.0 | 6.03e-01 | 95.9% | 98.3% |
| 4435677 | 2492.1.1.9 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › RadC | 0.67 | 47.0 | 5.31e-01 | 83.1% | 94.0% |
| 4642171 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.65 | 60.0 | 5.57e-01 | 97.1% | 83.8% |
| 5070642 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.65 | 58.0 | 5.37e-01 | 95.9% | 75.8% |
| 3235708 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.64 | 28.0 | 3.58e-01 | 85.5% | 67.0% |
| 3505724 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.62 | 45.0 | 4.85e-01 | 100.0% | 87.6% |
| 4103142 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.51 | 24.0 | 3.16e-01 | 87.2% | 85.0% |
| 4240860 | 3421.1.1.1 ↗ | a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD | 0.51 | 34.0 | 3.92e-01 | 79.1% | 91.4% |
| 3242288 | 2008.6.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains | 0.51 | 41.0 | 4.11e-01 | 86.6% | 98.3% |
| 4964070 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.50 | 42.0 | 3.68e-01 | 88.4% | 92.0% |
D2
high
residues 232-282