←Back to structures
IMGVR_UViG_3300002532_000037-3300002532-JGI24019J35510_100078120
Arc-VirIMGVR_UViG_3300002532_000037-3300002532-JGI24019J35510_100078120
Identity
- Kingdom:
- archaea
Quality
62.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-59
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o5wC03 | 6.10.250.130 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 40.0 | 4.39e-01 | 84.7% | 63.3% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 53.0 | 4.63e-01 | 89.8% | 97.6% |
| 2nooA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 34.0 | 2.20e-01 | 84.7% | 10.8% |
| 3jx9A00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.60 | 48.0 | 3.42e-01 | 86.4% | 72.8% |
| 2r8bA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 43.0 | 2.88e-01 | 84.7% | 21.6% |
| 2hmcA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 47.0 | 2.88e-01 | 86.4% | 19.1% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 45.0 | 4.07e-01 | 96.6% | 100.0% |
| 3ifrB02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 45.0 | 2.99e-01 | 91.5% | 63.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3785814 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.69 | 38.0 | 2.53e-01 | 89.8% | 13.8% |
| 3226581 | 376.1.1.19 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv | 0.62 | 43.0 | 4.30e-01 | 74.6% | 71.7% |
| 3182490 | 906.2.1.0 ↗ | few secondary structure elements › CCCH zinc finger › SSP1 C3H-type zinc finger › SSP1 C3H-type zinc finger | 0.61 | 51.0 | 4.45e-01 | 89.8% | 65.9% |
| 3688382 | 376.1.1.106 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 | 0.55 | 39.0 | 4.00e-01 | 76.3% | 81.8% |
| 5071927 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.54 | 38.0 | 3.95e-01 | 76.3% | 81.8% |
| 3215550 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.53 | 39.0 | 3.89e-01 | 84.7% | 78.3% |
| 3969625 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.52 | 45.0 | 2.92e-01 | 94.9% | 43.5% |
| 3701198 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 2.56e-01 | 83.1% | 29.6% |
| 4015777 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.50 | 37.0 | 3.83e-01 | 89.8% | 89.1% |
| 4062734 | 377.1.1.110 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF30316 | 0.50 | 33.0 | 3.54e-01 | 76.3% | 100.0% |