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IMGVR_UViG_3300002561_000002-3300002561-JGI25384J37096_100015132
Arc-VirIMGVR_UViG_3300002561_000002-3300002561-JGI25384J37096_100015132
Identity
- Kingdom:
- archaea
Quality
59.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 90-140
Domain cluster:
rep: IMGVR_UViG_643692049_000001-643692049-643840311__D6-55
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.82 | 64.0 | 6.79e-01 | 94.1% | 100.0% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.80 | 69.0 | 6.65e-01 | 100.0% | 86.0% |
| 3bs4A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 53.0 | 3.38e-01 | 74.5% | 91.0% |
| 2l66A00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.74 | 59.0 | 5.88e-01 | 100.0% | 86.8% |
| 1ub4C00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.74 | 60.0 | 5.35e-01 | 100.0% | 62.7% |
| 4wiaC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 46.0 | 3.02e-01 | 72.5% | 87.6% |
| 3f1yA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.66 | 38.0 | 2.30e-01 | 76.5% | 8.8% |
| 5dymA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 42.0 | 3.46e-01 | 70.6% | 78.1% |
| 1xhsA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.60 | 43.0 | 3.38e-01 | 98.0% | 34.5% |
| 2qzbA00 | 2.60.460.10 | Mainly Beta › Sandwich › protein yfey like fold › protein yfey like domain | 0.59 | 41.0 | 3.04e-01 | 100.0% | 26.2% |
| 1v30A00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.58 | 40.0 | 3.15e-01 | 96.1% | 31.4% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 2.97e-01 | 78.4% | 42.0% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 48.0 | 3.16e-01 | 98.0% | 36.5% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.55 | 37.0 | 2.75e-01 | 70.6% | 44.8% |
| 3h6qA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 39.0 | 2.78e-01 | 76.5% | 37.5% |
| 6xw5A01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.54 | 44.0 | 3.19e-01 | 100.0% | 97.7% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 43.0 | 3.29e-01 | 98.0% | 82.3% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 2.89e-01 | 84.3% | 50.9% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.54 | 43.0 | 3.21e-01 | 100.0% | 67.3% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 36.0 | 2.27e-01 | 70.6% | 23.0% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 3.60e-01 | 84.3% | 64.4% |
| 1ti2B01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 37.0 | 2.80e-01 | 76.5% | 42.1% |
| 2v1xA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 2.95e-01 | 72.5% | 36.4% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 37.0 | 2.77e-01 | 80.4% | 60.5% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 40.0 | 3.67e-01 | 100.0% | 61.1% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.20e-01 | 94.1% | 59.0% |
| 2nq2D00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 2.84e-01 | 98.0% | 21.8% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 39.0 | 2.91e-01 | 90.2% | 84.5% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.13e-01 | 96.1% | 58.9% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 38.0 | 3.15e-01 | 92.2% | 43.6% |
| 4uhvA02 | 3.55.50.10 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains | 0.50 | 40.0 | 3.38e-01 | 92.2% | 92.4% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032935 | 304.8.1.112 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin | 0.87 | 73.0 | 5.21e-01 | 100.0% | 34.1% |
| 4994136 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.86 | 68.0 | 6.54e-01 | 92.2% | 75.9% |
| 3984485 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.85 | 71.0 | 6.07e-01 | 100.0% | 58.7% |
| 3038102 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.84 | 73.0 | 7.08e-01 | 98.0% | 100.0% |
| 4992635 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.83 | 66.0 | 6.74e-01 | 94.1% | 91.8% |
| 5059101 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.83 | 64.0 | 6.72e-01 | 92.2% | 95.6% |
| 4993826 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.83 | 65.0 | 6.63e-01 | 94.1% | 91.7% |
| 1282166 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 72.0 | 6.87e-01 | 100.0% | 86.7% |
| 4005331 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.82 | 68.0 | 6.94e-01 | 100.0% | 94.0% |
| 5062781 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.81 | 64.0 | 6.72e-01 | 94.1% | 100.0% |
| 5001623 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.81 | 67.0 | 6.78e-01 | 98.0% | 94.0% |
| 4085449 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.80 | 65.0 | 5.74e-01 | 98.0% | 61.3% |
| 4990060 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.80 | 62.0 | 6.55e-01 | 98.0% | 100.0% |
| 5027484 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.80 | 63.0 | 6.56e-01 | 94.1% | 97.8% |
| 5032176 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.80 | 67.0 | 6.43e-01 | 100.0% | 81.7% |
| 4512243 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.79 | 68.0 | 6.48e-01 | 98.0% | 81.7% |
| 4947865 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 64.0 | 6.48e-01 | 98.0% | 94.0% |
| 4994020 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 64.0 | 6.19e-01 | 100.0% | 81.0% |
| 3588700 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 68.0 | 5.90e-01 | 100.0% | 63.7% |
| 4927110 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 61.0 | 6.34e-01 | 94.1% | 100.0% |
| 5031154 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.76 | 63.0 | 6.07e-01 | 100.0% | 81.7% |
| 4991158 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.76 | 57.0 | 5.90e-01 | 90.2% | 93.3% |
| 4933873 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.75 | 65.0 | 6.42e-01 | 100.0% | 90.9% |
| 5060420 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.75 | 59.0 | 6.11e-01 | 98.0% | 100.0% |
| 5078891 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.75 | 62.0 | 6.07e-01 | 94.1% | 94.5% |
| 5030511 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.75 | 56.0 | 5.80e-01 | 92.2% | 93.3% |
| 5067548 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.74 | 58.0 | 6.05e-01 | 94.1% | 100.0% |
| 4944882 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.74 | 57.0 | 5.81e-01 | 96.1% | 92.0% |
| 1104928 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.74 | 60.0 | 5.35e-01 | 100.0% | 62.7% |
| 3440138 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.74 | 63.0 | 5.56e-01 | 100.0% | 66.3% |
| 4959387 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.74 | 58.0 | 6.07e-01 | 94.1% | 100.0% |
| 3827943 | 1.1.11.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › At2g31720-like | 0.73 | 61.0 | 5.13e-01 | 96.1% | 60.0% |
| 4992409 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.73 | 57.0 | 5.92e-01 | 98.0% | 100.0% |
| 3451717 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.73 | 60.0 | 5.15e-01 | 94.1% | 58.8% |
| 3326674 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.72 | 61.0 | 5.99e-01 | 100.0% | 96.4% |
| 3590853 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.69 | 58.0 | 5.71e-01 | 100.0% | 89.1% |
| 5069260 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.69 | 55.0 | 5.60e-01 | 100.0% | 98.0% |
| 3491344 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 46.0 | 3.91e-01 | 74.5% | 48.8% |
| 5035358 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.64 | 53.0 | 5.17e-01 | 92.2% | 98.2% |
| 5003912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 44.0 | 3.15e-01 | 72.5% | 24.4% |
| 5028056 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.63 | 50.0 | 4.81e-01 | 98.0% | 78.3% |
| 3306957 | 1.1.3.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › DUF7271 | 0.62 | 50.0 | 4.82e-01 | 96.1% | 85.0% |
| 4238490 | 812.2.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase | 0.62 | 46.0 | 4.33e-01 | 84.3% | 93.8% |
| 5055279 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.60 | 41.0 | 2.75e-01 | 100.0% | 18.0% |
| 3687618 | 304.9.1.79 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28976 | 0.58 | 48.0 | 3.45e-01 | 98.0% | 80.6% |
| 3565365 | 5054.1.1.110 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Pecanex_C | 0.57 | 47.0 | 3.13e-01 | 98.0% | 95.2% |
| 3825435 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.54 | 44.0 | 3.24e-01 | 100.0% | 55.8% |
| 3789364 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 43.0 | 2.65e-01 | 96.1% | 17.4% |
| 5023112 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.54 | 41.0 | 3.41e-01 | 92.2% | 100.0% |
| 3730619 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.53 | 38.0 | 3.18e-01 | 84.3% | 99.1% |
| 5013748 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 44.0 | 2.87e-01 | 90.2% | 74.1% |
| 2337294 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.52 | 37.0 | 2.60e-01 | 72.5% | 56.1% |
| 4931077 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 42.0 | 2.91e-01 | 92.2% | 45.3% |
| 4981191 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.52 | 35.0 | 3.26e-01 | 72.5% | 51.4% |
| 3512028 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.52 | 41.0 | 2.66e-01 | 94.1% | 60.7% |
| 3282087 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.51 | 34.0 | 2.39e-01 | 70.6% | 28.5% |
| 3795719 | 810.1.1.2 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT | 0.51 | 41.0 | 3.03e-01 | 96.1% | 72.9% |
| 4525118 | 205.1.1.80 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4, Fer4_7, Fer4_9 | 0.51 | 34.0 | 2.65e-01 | 76.5% | 27.7% |
| None | — | 0.50 | 35.0 | 2.68e-01 | 76.5% | 29.6% |