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IMGVR_UViG_3300002641_009644-3300002641-loc_1087395308
Arc-VirIMGVR_UViG_3300002641_009644-3300002641-loc_1087395308
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-42_176-217
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00926.25 best | DHBP_synthase | 32.1 | 1.20e-07 | 50.7% | 18.3% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pvwA00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.92 | 78.0 | 5.29e-01 | 88.7% | 100.0% |
| 1g57A00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.89 | 84.0 | 5.74e-01 | 98.6% | 96.6% |
| 2orwB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 44.0 | 3.69e-01 | 80.3% | 66.9% |
| 3n05A02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 3.35e-01 | 85.9% | 77.2% |
| 1sfsA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 45.0 | 3.25e-01 | 87.3% | 85.0% |
| 1xo1A02 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.57 | 39.0 | 3.06e-01 | 71.8% | 79.9% |
| 7upvA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 48.0 | 2.96e-01 | 94.4% | 99.0% |
| 4ogzA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 47.0 | 3.17e-01 | 97.2% | 62.4% |
| 1kwgA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 43.0 | 2.78e-01 | 88.7% | 88.6% |
| 3sl1A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.55 | 42.0 | 2.81e-01 | 84.5% | 57.1% |
| 2aeuA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 47.0 | 3.44e-01 | 100.0% | 77.9% |
| 2py6A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 3.97e-01 | 98.6% | 97.5% |
| 1yt8A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.55 | 46.0 | 4.13e-01 | 98.6% | 93.5% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 43.0 | 3.57e-01 | 91.5% | 85.6% |
| 2aa4A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 43.0 | 3.57e-01 | 91.5% | 86.1% |
| 4rkrD02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 43.0 | 3.52e-01 | 93.0% | 90.3% |
| 3blvC00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.53 | 44.0 | 2.97e-01 | 100.0% | 67.3% |
| 1yu9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 43.0 | 3.29e-01 | 88.7% | 67.1% |
| 3pi7A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 42.0 | 3.46e-01 | 93.0% | 95.2% |
| 4fhdA02 | 3.80.30.30 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › | 0.53 | 40.0 | 2.82e-01 | 81.7% | 74.0% |
| 4rhiA00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.53 | 39.0 | 2.59e-01 | 78.9% | 21.5% |
| 4g3hC00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.53 | 41.0 | 2.69e-01 | 84.5% | 83.5% |
| 3lmkA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 43.0 | 3.35e-01 | 94.4% | 91.1% |
| 1t57A00 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.52 | 40.0 | 3.07e-01 | 87.3% | 76.8% |
| 5xc5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.24e-01 | 90.1% | 67.7% |
| 4l7aA00 | 3.40.390.70 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › | 0.52 | 42.0 | 2.96e-01 | 95.8% | 72.8% |
| 2c0cA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.23e-01 | 94.4% | 84.4% |
| 2rirA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.35e-01 | 93.0% | 90.5% |
| 6vssA01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.51 | 38.0 | 2.55e-01 | 83.1% | 79.2% |
| 2ef5A00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.50 | 36.0 | 2.50e-01 | 77.5% | 31.5% |
| 1gmxA00 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.50 | 42.0 | 3.72e-01 | 97.2% | 88.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4944412 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.99 | 89.0 | 6.10e-01 | 93.0% | 99.0% |
| 3737588 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.97 | 83.0 | 5.71e-01 | 88.7% | 99.0% |
| 3163803 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.97 | 94.0 | 6.36e-01 | 100.0% | 96.7% |
| 4187753 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.97 | 89.0 | 6.07e-01 | 94.4% | 99.0% |
| 3649067 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.92 | 89.0 | 5.97e-01 | 100.0% | 100.0% |
| 4928295 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.92 | 74.0 | 5.24e-01 | 84.5% | 100.0% |
| 5027278 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.92 | 80.0 | 5.29e-01 | 91.5% | 96.7% |
| 4329567 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.91 | 78.0 | 5.52e-01 | 88.7% | 100.0% |
| 4975786 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.86 | 75.0 | 5.09e-01 | 94.4% | 99.1% |
| 3203855 | 109.4.1.18 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPTA | 0.60 | 41.0 | 2.63e-01 | 100.0% | 13.9% |
| 4955789 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.59 | 52.0 | 3.43e-01 | 100.0% | 65.3% |
| 3588412 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.59 | 43.0 | 3.57e-01 | 77.5% | 97.6% |
| 5000615 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 50.0 | 4.13e-01 | 98.6% | 83.8% |
| 4680899 | 2003.1.1.32 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding | 0.57 | 45.0 | 3.79e-01 | 87.3% | 95.2% |
| 3383875 | 2007.25.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domain in Ribosomal protein L1 › Rossmann-like domain in Ribosomal protein L1 | 0.56 | 32.0 | 3.37e-01 | 80.3% | 58.5% |
| 5013520 | 2002.1.1.35 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DAHP_synth_1 | 0.55 | 48.0 | 3.24e-01 | 97.2% | 66.5% |
| 3979131 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.55 | 43.0 | 3.37e-01 | 87.3% | 75.8% |
| 3469867 | 2006.1.5.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase | 0.55 | 42.0 | 2.75e-01 | 84.5% | 52.9% |
| 3975175 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.55 | 43.0 | 3.75e-01 | 90.1% | 99.2% |
| 5078631 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 39.0 | 2.88e-01 | 76.1% | 47.7% |
| 5037658 | 2484.3.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › Creatinase_N | 0.54 | 40.0 | 3.28e-01 | 81.7% | 86.9% |
| 3286202 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.54 | 43.0 | 3.66e-01 | 93.0% | 90.8% |
| 3666617 | 2002.1.1.64 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 | 0.54 | 46.0 | 2.90e-01 | 98.6% | 89.3% |
| 3365408 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.54 | 45.0 | 2.96e-01 | 94.4% | 51.9% |
| 3988905 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.53 | 42.0 | 3.39e-01 | 87.3% | 46.9% |
| 3378801 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 37.0 | 3.47e-01 | 73.2% | 63.3% |
| 3829504 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.53 | 39.0 | 3.09e-01 | 80.3% | 100.0% |
| 3595918 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 43.0 | 2.80e-01 | 93.0% | 60.3% |
| 3923014 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 41.0 | 2.95e-01 | 83.1% | 43.5% |
| 3781695 | 2485.1.1.87 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N | 0.53 | 41.0 | 3.51e-01 | 93.0% | 51.7% |
| 3667945 | 2002.1.1.64 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_14 | 0.52 | 40.0 | 2.48e-01 | 83.1% | 65.3% |
| 5001088 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.52 | 41.0 | 3.46e-01 | 91.5% | 89.6% |
| 5030122 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.52 | 37.0 | 2.66e-01 | 77.5% | 31.7% |
| 1314306 | 2006.1.5.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase | 0.51 | 39.0 | 2.65e-01 | 87.3% | 80.5% |
| 4995736 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 41.0 | 3.08e-01 | 94.4% | 63.9% |
| 3956610 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.51 | 39.0 | 2.71e-01 | 80.3% | 52.4% |
D2
medium
residues 43-175
Domain cluster:
rep: IMGVR_UViG_3300032047_003349-3300032047-Ga0315330_100069219__D34-216
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00926.25 best | DHBP_synthase | 194.3 | 2.20e-57 | 100.0% | 69.1% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1g57A00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 1.00 | 98.0 | 8.14e-01 | 100.0% | 64.9% |
| 1pvwA00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.92 | 89.0 | 7.26e-01 | 100.0% | 71.2% |
| 4egjB03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.65 | 31.0 | 4.23e-01 | 100.0% | 92.2% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 31.0 | 3.58e-01 | 100.0% | 83.7% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.51 | 31.0 | 3.50e-01 | 96.2% | 81.2% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.50 | 34.0 | 3.09e-01 | 100.0% | 48.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3163803 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 1.00 | 98.0 | 8.08e-01 | 100.0% | 63.3% |
| 3737588 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.99 | 97.0 | 8.13e-01 | 100.0% | 67.0% |
| 3183668 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.99 | 97.0 | 7.60e-01 | 100.0% | 68.1% |
| 4944412 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.99 | 96.0 | 8.05e-01 | 100.0% | 66.0% |
| 3649067 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.98 | 96.0 | 7.79e-01 | 100.0% | 68.2% |
| 4187753 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.98 | 95.0 | 7.99e-01 | 100.0% | 66.0% |
| 3953794 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.98 | 91.0 | 7.76e-01 | 100.0% | 65.1% |
| 4680908 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.94 | 85.0 | 7.37e-01 | 100.0% | 65.3% |
| 5083078 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.92 | 88.0 | 7.05e-01 | 100.0% | 69.8% |
| 4975786 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.91 | 87.0 | 6.99e-01 | 100.0% | 70.2% |
| 5027278 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.91 | 87.0 | 6.92e-01 | 100.0% | 69.2% |
| 4971832 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.91 | 87.0 | 7.14e-01 | 100.0% | 70.9% |
| 4329567 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.91 | 79.0 | 7.03e-01 | 100.0% | 67.2% |
| 4928295 | 297.1.1.1 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB › DHBP_synthase | 0.88 | 82.0 | 7.12e-01 | 100.0% | 67.9% |
| 4255923 | 297.1.1.0 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB | 0.78 | 62.0 | 5.63e-01 | 100.0% | 64.1% |
| 4426567 | 297.1.1.0 ↗ | a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB | 0.78 | 56.0 | 5.28e-01 | 100.0% | 62.7% |