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IMGVR_UViG_3300002908_000011-3300002908-JGI25382J43887_100050992
Arc-VirIMGVR_UViG_3300002908_000011-3300002908-JGI25382J43887_100050992
Identity
- Kingdom:
- archaea
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 806-892
Domain cluster:
rep: IMGVR_UViG_3300002558_000006-3300002558-JGI25385J37094_100024362__D1297-1381
D2
medium
residues 1-118
Domain cluster:
rep: IMGVR_UViG_3300002908_000011-3300002908-JGI25382J43887_100050992__D375-381_383-461
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w7zA00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.72 | 56.0 | 4.60e-01 | 100.0% | 46.4% |
| 3eqnA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 64.0 | 4.53e-01 | 100.0% | 61.9% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 54.0 | 4.93e-01 | 100.0% | 62.7% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.67 | 53.0 | 4.80e-01 | 100.0% | 63.1% |
| 1igrA01 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.66 | 58.0 | 4.97e-01 | 94.9% | 63.0% |
| 3grhA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 60.0 | 4.15e-01 | 100.0% | 55.2% |
| 3zscA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 60.0 | 4.32e-01 | 100.0% | 55.3% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.61 | 54.0 | 3.53e-01 | 100.0% | 38.6% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 45.0 | 4.54e-01 | 90.7% | 92.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040588 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.74 | 52.0 | 5.18e-01 | 100.0% | 68.8% |
| 3787858 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.69 | 48.0 | 4.45e-01 | 100.0% | 56.0% |
| 3529560 | 207.2.1.45 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Daz | 0.68 | 62.0 | 4.43e-01 | 100.0% | 35.2% |
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.67 | 46.0 | 4.80e-01 | 100.0% | 79.0% |
| 2163978 | 207.10.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding | 0.66 | 56.0 | 4.48e-01 | 100.0% | 46.2% |
| 4020264 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.65 | 54.0 | 5.68e-01 | 100.0% | 99.0% |
| 4041561 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 53.0 | 4.14e-01 | 89.8% | 66.3% |
| 3281086 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.63 | 51.0 | 4.72e-01 | 100.0% | 68.0% |
| 4174514 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.63 | 53.0 | 4.16e-01 | 91.5% | 64.4% |
| 5005047 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.62 | 52.0 | 4.97e-01 | 99.2% | 76.4% |
| 4012012 | 207.4.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like | 0.62 | 48.0 | 5.17e-01 | 100.0% | 98.0% |
| 4949169 | 207.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C | 0.61 | 57.0 | 4.59e-01 | 100.0% | 54.9% |
| 3744798 | 208.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DUF1720 | 0.60 | 46.0 | 4.30e-01 | 100.0% | 64.7% |
| 3781698 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.58 | 52.0 | 3.98e-01 | 100.0% | 44.7% |
| 4023937 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.57 | 51.0 | 4.90e-01 | 100.0% | 88.1% |
| 3703307 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.55 | 48.0 | 3.95e-01 | 100.0% | 60.9% |
D3
medium
residues 119-164_166-232
Domain cluster:
rep: IMGVR_UViG_3300002558_000006-3300002558-JGI25385J37094_100024361__D289-395
D4
medium
residues 233-347
Domain cluster:
rep: IMGVR_UViG_3300002558_000006-3300002558-JGI25385J37094_100024361__D289-395
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kh3A00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.74 | 65.0 | 4.25e-01 | 100.0% | 22.4% |
| 3ljyA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.74 | 65.0 | 5.09e-01 | 100.0% | 46.0% |
| 3petA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.72 | 61.0 | 4.95e-01 | 100.0% | 49.1% |
| 4i84A00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 65.0 | 4.80e-01 | 100.0% | 55.4% |
| 2bm5B00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.71 | 63.0 | 5.42e-01 | 100.0% | 62.2% |
| 5jlvC00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.70 | 53.0 | 5.67e-01 | 84.3% | 93.8% |
| 4w8qA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 63.0 | 5.00e-01 | 100.0% | 78.6% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 63.0 | 4.72e-01 | 100.0% | 56.8% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.65 | 58.0 | 5.27e-01 | 100.0% | 72.0% |
| 4nzrM02 | 2.160.20.180 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.57 | 50.0 | 4.28e-01 | 97.4% | 77.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5007613 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.80 | 62.0 | 5.97e-01 | 100.0% | 72.7% |
| 5005047 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.79 | 64.0 | 5.96e-01 | 100.0% | 70.0% |
| 4951076 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.79 | 63.0 | 6.01e-01 | 100.0% | 72.6% |
| 4935712 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.78 | 64.0 | 5.91e-01 | 100.0% | 69.0% |
| 4965633 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.78 | 61.0 | 6.64e-01 | 95.7% | 100.0% |
| 4020264 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.78 | 63.0 | 6.61e-01 | 98.3% | 94.3% |
| 4026564 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.77 | 64.0 | 5.34e-01 | 100.0% | 52.3% |
| 3838073 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.77 | 57.0 | 6.05e-01 | 93.0% | 88.0% |
| 4497421 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.77 | 57.0 | 6.38e-01 | 90.4% | 100.0% |
| 5055230 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.75 | 69.0 | 5.23e-01 | 100.0% | 46.9% |
| 1141999 | 207.2.1.25 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA | 0.74 | 65.0 | 4.25e-01 | 100.0% | 22.4% |
| 3890348 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.73 | 53.0 | 5.62e-01 | 100.0% | 86.0% |
| 998972 | 207.2.1.18 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF2807 | 0.72 | 61.0 | 4.95e-01 | 100.0% | 49.1% |
| 4028784 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.70 | 59.0 | 6.15e-01 | 100.0% | 99.0% |
| 4030372 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.70 | 62.0 | 5.94e-01 | 100.0% | 83.7% |
| 4028145 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.70 | 62.0 | 5.61e-01 | 100.0% | 72.7% |
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 50.0 | 5.20e-01 | 100.0% | 87.6% |
| 3830293 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.66 | 47.0 | 5.26e-01 | 90.4% | 100.0% |
| 3299878 | 207.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC | 0.65 | 56.0 | 4.34e-01 | 100.0% | 42.7% |
| 4166179 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.64 | 53.0 | 4.87e-01 | 100.0% | 68.0% |
| 3778106 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.64 | 58.0 | 4.08e-01 | 100.0% | 46.9% |
| 3703307 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.60 | 52.0 | 4.21e-01 | 98.3% | 57.0% |
D5
medium
residues 375-381_383-461
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 55.0 | 3.38e-01 | 100.0% | 21.4% |
| 6kqsA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.62 | 54.0 | 3.48e-01 | 100.0% | 26.7% |
| 1gwbA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.59 | 51.0 | 3.68e-01 | 100.0% | 32.5% |
| 1h6uA02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.57 | 47.0 | 3.97e-01 | 100.0% | 50.6% |
| 2cdcA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 45.0 | 3.56e-01 | 94.2% | 64.7% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.53 | 46.0 | 4.31e-01 | 97.7% | 83.0% |
| 2hc9A01 | 3.40.50.10590 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases | 0.50 | 41.0 | 3.53e-01 | 95.3% | 87.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025775 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.73 | 52.0 | 4.74e-01 | 100.0% | 55.7% |
| 4935712 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.71 | 51.0 | 4.35e-01 | 100.0% | 45.5% |
| 3963707 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.69 | 46.0 | 4.82e-01 | 100.0% | 75.0% |
| 4497421 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.69 | 49.0 | 4.89e-01 | 100.0% | 72.2% |
| 5006685 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.68 | 48.0 | 4.10e-01 | 100.0% | 45.0% |
| 3838073 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.67 | 47.0 | 4.52e-01 | 100.0% | 63.0% |
| 4024907 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.67 | 49.0 | 4.40e-01 | 100.0% | 54.4% |
| 4928776 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.65 | 58.0 | 3.89e-01 | 100.0% | 40.7% |
| 3963299 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.63 | 47.0 | 4.40e-01 | 100.0% | 62.7% |
| 3926145 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.61 | 49.0 | 3.82e-01 | 100.0% | 39.5% |
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.59 | 40.0 | 3.76e-01 | 100.0% | 57.1% |
| 3458182 | 207.2.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 | 0.57 | 51.0 | 3.79e-01 | 100.0% | 50.2% |
D6
medium
residues 677-772
Domain cluster:
rep: IMGVR_UViG_3300002558_000006-3300002558-JGI25385J37094_100024362__D1167-1256
D7
medium
residues 893-942_944-999_1001-1007