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IMGVR_UViG_3300002966_000802-3300002966-JGI24721J44947_100196776

Arc-Vir

IMGVR_UViG_3300002966_000802-3300002966-JGI24721J44947_100196776

Quality

93.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-174
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.77 72.0 5.57e-01 100.0% 67.1%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.77 71.0 5.24e-01 100.0% 59.8%
5zyuA01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.76 71.0 5.64e-01 100.0% 66.7%
3k93A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.74 68.0 5.28e-01 100.0% 60.5%
7mi4A01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.71 66.0 5.36e-01 100.0% 57.4%
3sm4A00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.70 65.0 5.01e-01 100.0% 51.1%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.65 52.0 4.63e-01 92.6% 59.9%
2qx2A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.63 57.0 4.04e-01 99.1% 63.2%
1y88A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 54.0 5.14e-01 96.3% 80.8%
3ib5A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.62 56.0 3.92e-01 98.1% 54.4%
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 51.0 5.28e-01 96.3% 97.1%
4rcjA01 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.61 40.0 3.68e-01 91.7% 50.0%
4g6uA02 3.40.1350.110 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.61 53.0 4.86e-01 94.4% 80.4%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.60 43.0 4.58e-01 96.3% 85.4%
4kreA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 48.0 3.67e-01 92.6% 61.9%
6lpwB01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.57 42.0 3.49e-01 76.9% 79.7%
2or0B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.56 36.0 3.73e-01 74.1% 69.7%
6hjfA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 43.0 3.73e-01 84.3% 94.9%
3m7vA02 3.30.70.1250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phosphopentomutase 0.56 47.0 4.58e-01 92.6% 95.9%
2ragA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 43.0 3.05e-01 85.2% 53.7%
2fgyA03 3.30.1330.140 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Carboxysome Shell Carbonic Anhydrase, C-terminal domain 0.55 48.0 4.69e-01 94.4% 93.2%
2qmmA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.55 38.0 3.14e-01 74.1% 39.5%
3tixB02 3.40.1010.30 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 0.55 36.0 3.49e-01 89.8% 58.9%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.55 48.0 3.58e-01 99.1% 62.5%
3s2cA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 46.0 3.33e-01 96.3% 73.0%
5bwiA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 46.0 3.38e-01 96.3% 73.0%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.53 46.0 3.56e-01 96.3% 89.1%
1otgA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.53 39.0 3.80e-01 78.7% 87.2%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 45.0 3.54e-01 96.3% 70.0%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 3.29e-01 73.1% 95.7%
2xczA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.52 42.0 4.17e-01 86.1% 93.0%
2zigA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 3.25e-01 90.7% 39.4%
2qwvA00 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.52 37.0 3.11e-01 94.4% 42.0%
3g6sA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 43.0 3.31e-01 92.6% 63.2%
1g60B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 36.0 2.91e-01 100.0% 36.4%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4010258 2008.1.1.58 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 0.77 71.0 5.24e-01 100.0% 68.3%
4389411 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 66.0 4.82e-01 90.7% 61.6%
4490768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 65.0 3.59e-01 88.9% 12.3%
3480310 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 71.0 5.44e-01 100.0% 64.0%
4641844 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 67.0 3.70e-01 92.6% 13.0%
4060254 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 66.0 4.88e-01 91.7% 60.8%
4387318 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 65.0 4.91e-01 90.7% 63.8%
4467601 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 66.0 4.83e-01 92.6% 62.3%
5029815 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 70.0 5.43e-01 100.0% 66.0%
None 0.74 69.0 5.06e-01 100.0% 58.1%
136966 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 68.0 5.28e-01 100.0% 60.5%
4999640 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.73 69.0 5.41e-01 100.0% 63.3%
3508213 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 67.0 5.59e-01 99.1% 89.4%
4365754 2008.1.1.97 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.72 67.0 5.31e-01 100.0% 58.3%
4008820 3105.1.1.1 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase 0.70 47.0 4.34e-01 93.5% 54.1%
4941691 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.69 62.0 5.49e-01 96.3% 83.8%
3386658 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 60.0 4.97e-01 90.7% 75.4%
5076295 2008.1.1.107 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.69 60.0 5.58e-01 93.5% 83.7%
4960251 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.68 60.0 5.55e-01 95.4% 75.9%
3509755 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 57.0 5.09e-01 89.8% 70.0%
4402765 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 59.0 5.58e-01 95.4% 78.3%
4947569 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 60.0 5.24e-01 94.4% 72.3%
5079137 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.67 59.0 5.36e-01 93.5% 84.3%
4983302 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 59.0 5.42e-01 95.4% 77.1%
3506045 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 55.0 4.60e-01 88.9% 54.6%
4411889 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.67 56.0 4.42e-01 90.7% 48.6%
4084414 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.66 59.0 5.44e-01 97.2% 97.9%
4311371 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.66 58.0 5.58e-01 93.5% 93.3%
4931776 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 62.0 5.24e-01 100.0% 68.8%
4956304 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 59.0 4.77e-01 96.3% 67.5%
3386283 2008.1.1.100 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N_2 0.65 61.0 4.69e-01 100.0% 64.9%
4975459 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 59.0 5.18e-01 97.2% 89.7%
4667311 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.65 56.0 5.57e-01 96.3% 94.8%
4956059 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.64 56.0 4.84e-01 94.4% 66.7%
4329875 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.64 55.0 5.26e-01 94.4% 89.6%
4620724 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.63 54.0 5.26e-01 91.7% 91.7%
3954245 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.63 54.0 5.32e-01 93.5% 97.5%
4063889 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.63 55.0 5.41e-01 94.4% 98.2%
4534629 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.63 54.0 5.25e-01 95.4% 97.5%
4139009 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.63 54.0 5.28e-01 93.5% 92.2%
4468301 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.62 55.0 5.30e-01 96.3% 94.2%
4933915 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.62 54.0 4.76e-01 96.3% 82.5%
4238882 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.62 53.0 5.11e-01 94.4% 90.0%
3194432 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.61 42.0 2.85e-01 93.5% 19.2%
4968040 2008.1.1.235 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 0.61 53.0 4.95e-01 92.6% 83.8%
3615637 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 53.0 4.31e-01 96.3% 71.4%
4109165 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.61 54.0 5.23e-01 99.1% 91.7%
4946865 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 49.0 4.90e-01 95.4% 83.6%
3223694 2008.1.1.94 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 0.61 53.0 4.53e-01 96.3% 77.1%
4023992 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.60 52.0 3.49e-01 92.6% 61.8%
4318361 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.60 53.0 5.08e-01 96.3% 92.8%
4306163 2008.1.1.6 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.60 52.0 5.16e-01 96.3% 92.2%
3273439 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.60 51.0 3.72e-01 92.6% 53.8%
3249751 2006.1.6.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.59 40.0 3.00e-01 72.2% 28.1%
1117757 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.58 49.0 3.63e-01 92.6% 67.1%
3756825 2003.1.5.53 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.57 48.0 3.17e-01 90.7% 33.4%
2570431 2008.1.1.75 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › capSnatchArena 0.57 46.0 3.81e-01 88.0% 66.2%
1902191 4344.1.1.0 0.57 48.0 4.60e-01 90.7% 94.3%
3928910 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.57 49.0 3.42e-01 93.5% 50.3%
5074968 2008.1.1.122 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DpnII-MboI 0.57 49.0 4.49e-01 96.3% 71.0%
4960646 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 47.0 4.68e-01 95.4% 87.0%
3939626 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.56 34.0 2.84e-01 72.2% 34.2%
3706300 2492.1.1.2 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.56 50.0 4.02e-01 99.1% 79.9%
3622298 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.54 45.0 3.31e-01 92.6% 59.0%
5057247 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.53 34.0 3.31e-01 99.1% 56.7%
3221572 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 45.0 3.50e-01 92.6% 49.6%
3427017 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.53 35.0 3.83e-01 90.7% 83.1%
3272198 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 45.0 3.38e-01 94.4% 56.0%
5080733 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 44.0 4.18e-01 92.6% 81.5%
4405228 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.52 37.0 3.04e-01 92.6% 39.9%
3276153 2007.2.1.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.52 43.0 3.53e-01 91.7% 58.5%
4986238 2488.1.1.8 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › Methyltrn_RNA_2 0.51 36.0 3.02e-01 91.7% 39.9%
3933151 2006.1.6.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 0.51 33.0 2.77e-01 88.9% 35.9%
3222965 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.50 37.0 3.08e-01 88.9% 44.9%
D2 medium residues 26-66_175-217
PDB
Domain cluster: representative