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IMGVR_UViG_3300002966_000910-3300002966-JGI24721J44947_1000064940

Arc-Vir

IMGVR_UViG_3300002966_000910-3300002966-JGI24721J44947_1000064940

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 57.0 5.90e-01 92.6% 75.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 64.0 6.20e-01 98.9% 76.7%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 6.54e-01 96.8% 97.5%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 6.15e-01 96.8% 96.2%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 56.0 5.92e-01 97.9% 89.3%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 64.0 5.80e-01 96.8% 81.9%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.72 53.0 3.38e-01 76.6% 58.2%
3keoA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 5.47e-01 100.0% 91.7%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 5.47e-01 100.0% 90.4%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 43.0 5.13e-01 91.5% 95.2%
3euhC02 1.10.10.2260 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MukE-like family, C-terminal domain 0.67 60.0 5.72e-01 96.8% 88.9%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 49.0 4.40e-01 100.0% 55.3%
1mswD01 1.10.1320.10 Mainly Alpha › Orthogonal Bundle › T7 RNA polymerase; domain 1 › DNA-directed RNA polymerase, N-terminal domain 0.66 59.0 4.12e-01 100.0% 50.6%
6g28A00 1.10.4080.10 Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 0.65 58.0 3.90e-01 100.0% 54.6%
2vxzA02 1.10.10.1490 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 53.0 5.45e-01 98.9% 97.7%
1eg3A04 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 44.0 4.68e-01 87.2% 84.1%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 46.0 4.21e-01 98.9% 60.2%
1uurA03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 44.0 4.53e-01 90.4% 78.4%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 51.0 4.46e-01 100.0% 59.1%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.61 51.0 4.86e-01 95.7% 100.0%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.60 44.0 3.12e-01 78.7% 72.8%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.59 46.0 4.62e-01 100.0% 84.0%
2pbxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 52.0 4.10e-01 100.0% 83.2%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 51.0 3.99e-01 98.9% 84.7%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 48.0 3.65e-01 91.5% 65.9%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.56 37.0 3.71e-01 76.6% 66.7%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.55 49.0 4.22e-01 96.8% 86.6%
4s2rQ03 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.55 49.0 3.46e-01 100.0% 96.3%
3rlbA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.55 48.0 3.93e-01 97.9% 85.8%
3iu0A00 3.90.1360.10 Alpha Beta › Alpha-Beta Complex › Microbial transglutaminase. Chain: a › Protein-glutamine gamma-glutamyltransferase 0.53 49.0 3.26e-01 100.0% 67.8%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 47.0 3.79e-01 98.9% 77.6%
1l3pA00 1.20.120.320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen 0.53 41.0 4.05e-01 96.8% 79.4%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 36.0 4.02e-01 97.9% 90.7%
6qm7J00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 44.0 3.41e-01 91.5% 66.7%
7smtA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.52 36.0 2.95e-01 70.2% 92.5%
2hkuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 45.0 3.67e-01 100.0% 84.9%
6humG01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.51 33.0 2.89e-01 77.7% 38.1%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 42.0 3.37e-01 92.6% 67.9%
1xoiA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.50 41.0 2.65e-01 90.4% 21.1%
8adnN01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 42.0 3.33e-01 91.5% 69.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3303765 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.86 48.0 3.92e-01 76.6% 33.1%
3297365 101.1.1.30 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 0.85 47.0 3.77e-01 75.5% 30.8%
5042147 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.85 61.0 6.55e-01 100.0% 87.5%
5007881 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.84 61.0 6.26e-01 100.0% 78.9%
5048345 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 58.0 5.73e-01 96.8% 69.4%
5054311 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.81 58.0 5.95e-01 96.8% 77.5%
4972208 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.81 65.0 6.65e-01 97.9% 87.8%
4948021 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 58.0 6.23e-01 100.0% 87.5%
3958918 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 67.0 6.69e-01 97.9% 87.4%
3954637 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.80 67.0 6.61e-01 97.9% 84.0%
4996559 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 61.0 6.72e-01 93.6% 100.0%
4979490 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 67.0 6.07e-01 96.8% 69.2%
4392375 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.79 66.0 6.22e-01 96.8% 75.5%
3597393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 65.0 5.52e-01 98.9% 55.3%
3267096 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 56.0 6.39e-01 100.0% 100.0%
4978321 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.78 62.0 6.37e-01 98.9% 87.8%
3713916 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.25e-01 93.6% 82.0%
3744213 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.77 61.0 5.26e-01 96.8% 55.7%
5056343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 61.0 5.53e-01 100.0% 63.2%
3532208 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.77 64.0 5.01e-01 100.0% 44.9%
4438125 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 61.0 6.01e-01 100.0% 80.0%
4936862 101.1.2.67 alpha arrays › HTH › HTH › winged helix domain › HARE-HTH 0.76 59.0 6.17e-01 97.9% 89.4%
3632793 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.76 64.0 6.32e-01 98.9% 85.0%
3213834 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.76 52.0 5.61e-01 100.0% 83.5%
4195219 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.74 60.0 5.91e-01 98.9% 81.0%
3701431 101.1.2.57 alpha arrays › HTH › HTH › winged helix domain › EAP30 0.74 64.0 5.19e-01 98.9% 51.2%
3290705 101.1.2.81 alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.74 51.0 5.32e-01 100.0% 77.6%
3276654 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.74 68.0 4.71e-01 100.0% 49.8%
4589278 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.72 58.0 5.58e-01 100.0% 76.2%
3394689 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 66.0 6.37e-01 100.0% 90.3%
3897149 101.1.2.500 alpha arrays › HTH › HTH › winged helix domain › PF30898 0.71 60.0 5.85e-01 94.7% 81.9%
4602598 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.71 63.0 5.72e-01 96.8% 72.0%
3739861 101.1.2.198 alpha arrays › HTH › HTH › winged helix domain › ORC1_wHTH 0.71 63.0 5.91e-01 96.8% 80.0%
3922669 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.62e-01 100.0% 80.0%
3781893 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.70 62.0 5.32e-01 96.8% 83.2%
3744818 101.1.1.213 alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H 0.70 47.0 5.20e-01 80.9% 88.0%
4235019 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.70 61.0 5.94e-01 98.9% 85.7%
3532207 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.69 61.0 5.94e-01 98.9% 85.7%
5053751 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 54.0 5.43e-01 100.0% 82.1%
3554191 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.69 62.0 4.31e-01 100.0% 49.8%
5031834 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 5.20e-01 98.9% 81.1%
3627131 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 63.0 5.86e-01 98.9% 87.0%
3240959 7558.1.1.0 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.68 62.0 5.89e-01 98.9% 90.0%
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.68 44.0 5.15e-01 91.5% 95.4%
4479128 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.68 63.0 4.95e-01 100.0% 74.6%
3962321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.53e-01 100.0% 86.0%
4022715 5051.1.1.10 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.67 49.0 3.08e-01 76.6% 55.2%
4071682 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.67 60.0 4.80e-01 100.0% 74.1%
4955372 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 5.33e-01 98.9% 80.0%
5078412 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.33e-01 98.9% 79.8%
3268812 108.1.1.34 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_12 0.62 44.0 4.49e-01 90.4% 76.7%
3472347 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 54.0 3.43e-01 100.0% 65.3%
3186578 101.38.1.2 alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › DUF7721 0.60 48.0 4.20e-01 95.7% 57.9%
4611743 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.60 47.0 4.83e-01 92.6% 90.0%
137167 101.1.2.230 alpha arrays › HTH › HTH › winged helix domain › PSV_trans_reg_dom 0.59 49.0 5.05e-01 100.0% 98.9%
3929356 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 46.0 4.65e-01 85.1% 92.6%
3170086 101.1.1.122 alpha arrays › HTH › HTH › Three-helical HTH › DUP 0.59 49.0 4.91e-01 93.6% 93.7%
3227958 101.1.2.106 alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.59 49.0 4.16e-01 93.6% 55.5%
1762058 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.59 45.0 4.62e-01 95.7% 84.6%
3187484 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 53.0 3.87e-01 100.0% 79.2%
4287075 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.57 43.0 4.45e-01 94.7% 85.6%
4283506 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.57 45.0 4.60e-01 94.7% 90.0%
4560905 108.1.1.30 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 0.57 51.0 4.60e-01 100.0% 80.0%
3738042 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.56 33.0 3.74e-01 70.2% 78.6%
3281517 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.56 49.0 4.01e-01 100.0% 88.9%
3590903 5073.1.1.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.55 44.0 2.94e-01 100.0% 22.2%
3442783 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.55 36.0 3.48e-01 77.7% 58.2%
4607820 108.1.1.73 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.54 48.0 4.33e-01 100.0% 80.0%
3265344 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.53 46.0 3.34e-01 96.8% 93.8%
4114241 4952.1.1.0 alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like 0.52 35.0 3.45e-01 76.6% 64.0%