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IMGVR_UViG_3300002966_001123-3300002966-JGI24721J44947_1000100522

Arc-Vir

IMGVR_UViG_3300002966_001123-3300002966-JGI24721J44947_1000100522

Identity

Kingdom:
archaea

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-109
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 6.47e-01 96.3% 98.8%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 5.56e-01 77.6% 100.0%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 5.22e-01 80.4% 94.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 35.0 4.22e-01 73.8% 88.2%
1y7xA02 2.30.30.550 Mainly Beta › Roll › SH3 type barrels. › Major Vault Protein repeat 0.57 30.0 3.94e-01 74.8% 96.4%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 4.11e-01 73.8% 100.0%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.53 37.0 3.72e-01 84.1% 71.6%
2xgjA05 2.40.30.300 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 42.0 3.92e-01 87.9% 86.2%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.50 33.0 3.47e-01 81.3% 73.2%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.45e-01 74.8% 76.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.46e-01 91.6% 100.0%
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.76 49.0 5.21e-01 83.2% 73.7%
5031673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 67.0 6.76e-01 97.2% 96.2%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 52.0 6.02e-01 85.0% 98.8%
4425420 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 51.0 5.74e-01 85.0% 94.1%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.69 55.0 5.30e-01 97.2% 75.0%
3636066 4.1.1.179 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6590 0.66 59.0 5.15e-01 99.1% 95.0%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 44.0 5.27e-01 85.0% 100.0%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 43.0 4.21e-01 86.9% 67.0%
3427504 4.1.1.150 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3123 0.60 39.0 4.59e-01 74.8% 100.0%
3612182 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.49e-01 73.8% 100.0%
4943576 4.23.1.0 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.57 45.0 4.29e-01 85.0% 74.4%
4517543 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.57 45.0 4.29e-01 85.0% 75.2%
4650682 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 45.0 4.23e-01 85.0% 70.8%
3284813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.45e-01 76.6% 100.0%
3842362 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.55 43.0 4.58e-01 85.0% 94.7%
5035282 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 44.0 4.18e-01 85.0% 76.0%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 44.0 4.16e-01 85.0% 72.8%
5058724 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 44.0 4.17e-01 86.0% 74.4%
1157717 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 43.0 4.05e-01 85.0% 88.5%
4983074 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 43.0 4.06e-01 85.0% 73.8%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 43.0 4.03e-01 85.0% 73.8%
4999914 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.54 43.0 4.06e-01 86.0% 73.8%
3738927 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.53 45.0 4.25e-01 90.7% 83.2%
3505947 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.52 41.0 3.95e-01 84.1% 95.8%
3569124 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.51 37.0 3.24e-01 75.7% 98.8%