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IMGVR_UViG_3300003492_000010-3300003492-JGI26245J51145_10012642
Arc-VirIMGVR_UViG_3300003492_000010-3300003492-JGI26245J51145_10012642
Identity
- Kingdom:
- archaea
Quality
88.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-175
Domain cluster:
rep: LC779065.1__BES79950.1__X__00177__D663-844
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 26.7 | 4.10e-06 | 99.4% | 16.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.87 | 57.0 | 5.21e-01 | 100.0% | 52.0% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.67 | 34.0 | 4.43e-01 | 82.2% | 84.2% |
| 2mqaA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.51 | 34.0 | 3.92e-01 | 81.6% | 93.6% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 32.0 | 3.87e-01 | 72.4% | 95.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3613807 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.86 | 59.0 | 5.97e-01 | 100.0% | 69.7% |
| 3600872 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.86 | 59.0 | 6.11e-01 | 100.0% | 73.9% |
| 4896487 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 56.0 | 6.52e-01 | 100.0% | 90.7% |
| 4896460 | 1.1.2.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 | 0.84 | 56.0 | 6.49e-01 | 100.0% | 90.7% |
| 4148017 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.81 | 75.0 | 6.85e-01 | 100.0% | 76.8% |
| 4648953 | 3860.1.1.130 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Yae1_N | 0.57 | 28.0 | 3.41e-01 | 79.9% | 69.6% |
| 4386395 | 563.1.1.1 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP | 0.52 | 27.0 | 3.44e-01 | 71.8% | 86.0% |
| 4371144 | 3560.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Med8 | 0.52 | 28.0 | 2.87e-01 | 77.0% | 54.1% |
| 3560925 | 604.1.1.20 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA | 0.50 | 27.0 | 3.36e-01 | 77.6% | 82.7% |
D2
medium
residues 187-278
Domain cluster:
rep: rifoxya1_full_scaffold_1_prodigal-single.1__X__X__00320__D1277-1362