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IMGVR_UViG_3300003492_000010-3300003492-JGI26245J51145_10012646
Arc-VirIMGVR_UViG_3300003492_000010-3300003492-JGI26245J51145_10012646
Identity
- Kingdom:
- archaea
Quality
73.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-81
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.66 | 54.0 | 4.39e-01 | 89.3% | 83.3% |
| 4pt4B00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.63 | 49.0 | 4.10e-01 | 85.7% | 78.4% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.62 | 52.0 | 4.17e-01 | 91.1% | 79.6% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.60 | 49.0 | 4.08e-01 | 89.3% | 82.3% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.60 | 50.0 | 3.95e-01 | 100.0% | 44.2% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.56 | 46.0 | 3.70e-01 | 100.0% | 44.3% |
| 2ltjA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.55 | 39.0 | 3.25e-01 | 78.6% | 55.9% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 34.0 | 2.87e-01 | 78.6% | 34.6% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.54 | 43.0 | 3.04e-01 | 100.0% | 63.6% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 35.0 | 2.64e-01 | 100.0% | 23.1% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.52 | 44.0 | 3.25e-01 | 100.0% | 51.2% |
| 4f8lA00 | 2.60.40.3590 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 35.0 | 2.74e-01 | 71.4% | 57.2% |
| 3bjsA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 36.0 | 2.96e-01 | 98.2% | 35.9% |
| 6qdwt00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 37.0 | 3.30e-01 | 100.0% | 49.5% |
| 4y6iA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 42.0 | 3.54e-01 | 100.0% | 81.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979626 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 58.0 | 4.31e-01 | 100.0% | 33.8% |
| 3174942 | 242.1.1.3 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end | 0.69 | 47.0 | 3.71e-01 | 100.0% | 33.3% |
| 4508411 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.68 | 54.0 | 4.44e-01 | 85.7% | 76.0% |
| 4284216 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.68 | 54.0 | 4.52e-01 | 85.7% | 80.0% |
| 4051851 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.67 | 56.0 | 4.57e-01 | 89.3% | 88.0% |
| 163570 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.66 | 54.0 | 4.39e-01 | 89.3% | 83.3% |
| 4227571 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.65 | 54.0 | 4.40e-01 | 89.3% | 80.0% |
| 3964061 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.64 | 52.0 | 4.22e-01 | 89.3% | 81.7% |
| 3736331 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 51.0 | 3.12e-01 | 96.4% | 16.3% |
| 4240651 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.63 | 52.0 | 4.24e-01 | 89.3% | 79.0% |
| 5073165 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.63 | 53.0 | 4.48e-01 | 91.1% | 88.9% |
| 4088528 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.60 | 53.0 | 4.34e-01 | 100.0% | 54.0% |
| 4681823 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.59 | 51.0 | 4.20e-01 | 94.6% | 83.0% |
| 4274974 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.58 | 51.0 | 4.16e-01 | 100.0% | 54.0% |
| 5027492 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.57 | 44.0 | 3.34e-01 | 100.0% | 35.0% |
| 3183475 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.56 | 41.0 | 2.99e-01 | 98.2% | 27.1% |
| 4168202 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.54 | 44.0 | 3.82e-01 | 96.4% | 58.1% |
| 2658958 | 265.1.1.1 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat | 0.53 | 44.0 | 3.46e-01 | 100.0% | 42.9% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.52 | 34.0 | 3.07e-01 | 92.9% | 44.6% |
| 3879556 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 41.0 | 2.97e-01 | 94.6% | 86.8% |
| 5074340 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 42.0 | 3.21e-01 | 100.0% | 37.9% |
| 3643378 | 825.1.1.0 ↗ | beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins | 0.51 | 39.0 | 3.03e-01 | 100.0% | 85.3% |
| 4028824 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.50 | 31.0 | 3.22e-01 | 83.9% | 63.0% |
| 3910890 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 36.0 | 2.95e-01 | 98.2% | 39.1% |