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IMGVR_UViG_3300003492_000127-3300003492-JGI26245J51145_10020581
Arc-VirIMGVR_UViG_3300003492_000127-3300003492-JGI26245J51145_10020581
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 67-154_299-328
Domain cluster:
rep: IMGVR_UViG_3300017963_002309-3300017963-Ga0180437_100101368__D69-162_259-278
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.69 | 62.0 | 5.19e-01 | 100.0% | 95.1% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.63 | 46.0 | 3.73e-01 | 75.4% | 86.2% |
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.59 | 43.0 | 3.67e-01 | 75.4% | 94.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5045797 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.70 | 58.0 | 4.96e-01 | 89.8% | 97.9% |
| 5056632 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 54.0 | 4.31e-01 | 85.6% | 100.0% |
| 4046812 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.67 | 55.0 | 4.74e-01 | 89.8% | 97.4% |
| 3837602 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 54.0 | 4.04e-01 | 90.7% | 87.2% |
| 4938605 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.63 | 49.0 | 3.94e-01 | 83.9% | 100.0% |
| 3614372 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.62 | 46.0 | 3.61e-01 | 78.0% | 75.0% |
| 4022097 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.60 | 50.0 | 3.86e-01 | 92.4% | 92.4% |
| 4955137 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.59 | 48.0 | 4.20e-01 | 89.0% | 97.2% |
| 2739701 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.58 | 41.0 | 3.63e-01 | 73.7% | 68.6% |
| 5005553 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 46.0 | 3.57e-01 | 87.3% | 98.1% |
| 3886914 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.57 | 39.0 | 3.28e-01 | 70.3% | 68.8% |
| 4930397 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.53 | 44.0 | 3.40e-01 | 93.2% | 94.0% |
| 4074416 | 2008.1.1.67 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecC_C | 0.52 | 42.0 | 3.22e-01 | 90.7% | 85.2% |
D2
medium
residues 155-298
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.75 | 49.0 | 4.40e-01 | 100.0% | 48.5% |
| 3zigA00 | 3.30.110.150 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein | 0.51 | 29.0 | 3.52e-01 | 77.1% | 93.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3486967 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.56 | 33.0 | 3.28e-01 | 83.3% | 54.7% |
| 3242116 | 328.7.1.0 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain | 0.53 | 33.0 | 3.04e-01 | 79.2% | 48.3% |
| 5027367 | 328.9.1.1 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF | 0.52 | 28.0 | 3.60e-01 | 76.4% | 92.5% |
| 4971553 | 328.9.1.1 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF | 0.52 | 28.0 | 3.59e-01 | 75.0% | 93.8% |
| 3411130 | 328.7.1.1 ↗ | a+b two layers › IF3-like › Smr domain › Smr domain › Smr | 0.51 | 32.0 | 3.59e-01 | 83.3% | 80.9% |
| 5015317 | 328.9.1.1 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain › SepF | 0.50 | 28.0 | 3.48e-01 | 75.7% | 89.4% |