←Back to structures
IMGVR_UViG_3300003495_000121-3300003495-JGI26244J51143_10013161
Arc-VirIMGVR_UViG_3300003495_000121-3300003495-JGI26244J51143_10013161
Identity
- Kingdom:
- archaea
Quality
97.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-81
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g68A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.67 | 49.0 | 4.01e-01 | 100.0% | 42.1% |
| 1auoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.65 | 59.0 | 4.26e-01 | 100.0% | 89.9% |
| 6oibA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 56.0 | 4.57e-01 | 98.7% | 68.2% |
| 2iw1A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.64 | 55.0 | 4.23e-01 | 100.0% | 41.3% |
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.63 | 41.0 | 4.10e-01 | 97.5% | 64.2% |
| 3bxpB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.63 | 55.0 | 3.90e-01 | 100.0% | 82.8% |
| 2cb0A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.63 | 47.0 | 3.84e-01 | 100.0% | 42.1% |
| 1wiwA01 | 3.40.50.10920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 43.0 | 3.74e-01 | 98.7% | 45.2% |
| 2qhaA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 55.0 | 3.64e-01 | 100.0% | 39.9% |
| 3fj1A02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 47.0 | 4.01e-01 | 100.0% | 48.5% |
| 2amlA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.62 | 48.0 | 3.96e-01 | 100.0% | 45.6% |
| 2vxoA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 54.0 | 3.98e-01 | 100.0% | 48.0% |
| 3knzA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.61 | 46.0 | 3.85e-01 | 100.0% | 44.5% |
| 1r6uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 54.0 | 3.82e-01 | 100.0% | 42.6% |
| 2inbA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 54.0 | 4.56e-01 | 97.5% | 61.7% |
| 4fdxB00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.60 | 38.0 | 4.17e-01 | 83.5% | 79.7% |
| 2qe7G02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.60 | 52.0 | 4.48e-01 | 100.0% | 64.6% |
| 1ad1A00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.60 | 52.0 | 3.67e-01 | 100.0% | 73.9% |
| 3no3A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.59 | 53.0 | 3.78e-01 | 100.0% | 51.3% |
| 6ogmD00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 38.0 | 4.24e-01 | 84.8% | 83.6% |
| 4nesA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 50.0 | 3.94e-01 | 93.7% | 57.7% |
| 1dpgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 51.0 | 4.03e-01 | 100.0% | 54.9% |
| 2wmfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 53.0 | 3.43e-01 | 100.0% | 49.9% |
| 5l9aB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 50.0 | 3.42e-01 | 100.0% | 69.4% |
| 2fm7A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 37.0 | 4.14e-01 | 84.8% | 82.3% |
| 3m20A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 35.0 | 4.02e-01 | 86.1% | 81.4% |
| 3mb2B00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.58 | 38.0 | 4.29e-01 | 82.3% | 88.1% |
| 4nv0A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 50.0 | 3.69e-01 | 100.0% | 57.1% |
| 7l1rG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.57 | 49.0 | 3.68e-01 | 100.0% | 38.2% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 50.0 | 4.00e-01 | 98.7% | 70.0% |
| 3ej3C00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.57 | 36.0 | 3.96e-01 | 84.8% | 79.7% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.57 | 50.0 | 4.08e-01 | 98.7% | 85.1% |
| 7dd9A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.56 | 50.0 | 3.44e-01 | 100.0% | 62.9% |
| 3b34A02 | 3.30.2010.30 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.56 | 39.0 | 3.81e-01 | 92.4% | 65.9% |
| 1hf2A01 | 3.30.750.50 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Cell-division inhibitor MinC, N-terminal domain | 0.56 | 47.0 | 4.53e-01 | 97.5% | 83.3% |
| 7n0eB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.56 | 38.0 | 3.29e-01 | 87.3% | 45.1% |
| 1usgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 42.0 | 3.26e-01 | 100.0% | 33.8% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 37.0 | 3.97e-01 | 84.8% | 82.1% |
| 4xcvA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 48.0 | 3.68e-01 | 100.0% | 41.7% |
| 3eytB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 46.0 | 3.76e-01 | 94.9% | 64.9% |
| 2dfjA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.54 | 44.0 | 3.12e-01 | 92.4% | 90.3% |
| 5zi7A02 | 3.30.2010.30 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.54 | 37.0 | 3.69e-01 | 92.4% | 67.1% |
| 3ghfA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 45.0 | 4.19e-01 | 96.2% | 86.0% |
| 1eq2A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 43.0 | 3.29e-01 | 100.0% | 52.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945320 | 7516.1.1.10 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC | 0.72 | 66.0 | 4.86e-01 | 100.0% | 42.6% |
| 3447026 | 7575.1.1.1 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 | 0.70 | 52.0 | 3.53e-01 | 100.0% | 21.7% |
| 5058066 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.68 | 61.0 | 5.38e-01 | 100.0% | 96.5% |
| 4969007 | 7575.1.1.3 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C13 | 0.66 | 59.0 | 4.01e-01 | 98.7% | 41.4% |
| 5069250 | 7601.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lar_N | 0.66 | 56.0 | 3.88e-01 | 92.4% | 50.2% |
| 4021668 | 7516.1.1.12 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Fringe | 0.65 | 57.0 | 3.98e-01 | 100.0% | 32.0% |
| 4948133 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.64 | 39.0 | 4.28e-01 | 83.5% | 75.4% |
| 4995790 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.62 | 54.0 | 3.76e-01 | 98.7% | 93.6% |
| 4016579 | 7516.1.1.12 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Fringe | 0.62 | 54.0 | 3.73e-01 | 100.0% | 36.5% |
| 3703702 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.62 | 47.0 | 3.80e-01 | 100.0% | 41.9% |
| 3812527 | 2002.1.1.254 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GH5_mannosidase | 0.61 | 55.0 | 3.45e-01 | 100.0% | 39.5% |
| 5048606 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.61 | 55.0 | 4.63e-01 | 100.0% | 60.0% |
| 3313216 | 2007.1.6.14 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › PF31181 | 0.61 | 53.0 | 4.23e-01 | 94.9% | 79.4% |
| 5045192 | 7512.1.1.13 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans | 0.61 | 53.0 | 4.04e-01 | 98.7% | 56.4% |
| 3734067 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.61 | 54.0 | 3.69e-01 | 100.0% | 31.7% |
| 4466431 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.61 | 54.0 | 3.67e-01 | 100.0% | 68.6% |
| 3680738 | 7575.1.1.12 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14, PF31181 | 0.61 | 52.0 | 3.43e-01 | 94.9% | 64.2% |
| 3715277 | 7514.1.1.0 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain | 0.61 | 44.0 | 4.09e-01 | 77.2% | 79.0% |
| 2137603 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.60 | 39.0 | 4.30e-01 | 84.8% | 85.0% |
| 4177287 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.60 | 38.0 | 4.25e-01 | 84.8% | 85.0% |
| 3461013 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.59 | 52.0 | 3.91e-01 | 100.0% | 70.2% |
| 140029 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.59 | 53.0 | 3.78e-01 | 100.0% | 51.3% |
| 3965082 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.59 | 38.0 | 3.22e-01 | 84.8% | 38.5% |
| 4947837 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.59 | 50.0 | 3.55e-01 | 98.7% | 78.5% |
| 5047779 | 2003.1.1.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › CoA_binding_2 | 0.59 | 51.0 | 4.31e-01 | 100.0% | 58.5% |
| 4928222 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.58 | 50.0 | 3.75e-01 | 98.7% | 93.9% |
| 2715553 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.58 | 46.0 | 4.02e-01 | 96.2% | 56.7% |
| 4953115 | 315.1.1.2 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase | 0.58 | 38.0 | 4.19e-01 | 84.8% | 86.7% |
| 4969018 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.58 | 48.0 | 3.75e-01 | 93.7% | 58.3% |
| 3806605 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.57 | 50.0 | 3.63e-01 | 100.0% | 79.4% |
| 4163385 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.57 | 45.0 | 3.17e-01 | 94.9% | 27.9% |
| 4955563 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.57 | 48.0 | 3.77e-01 | 94.9% | 49.1% |
| 5000598 | 2008.3.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain | 0.56 | 49.0 | 4.39e-01 | 96.2% | 70.9% |
| 3836058 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.56 | 50.0 | 4.11e-01 | 100.0% | 96.6% |
| 5038710 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.56 | 49.0 | 4.10e-01 | 100.0% | 75.7% |
| 3386209 | 7561.1.1.1 ↗ | a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase | 0.55 | 45.0 | 3.58e-01 | 93.7% | 75.1% |
| 4679331 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.53 | 42.0 | 4.06e-01 | 100.0% | 75.8% |
| 4547149 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.53 | 45.0 | 3.72e-01 | 96.2% | 51.7% |
| 4942035 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.52 | 45.0 | 3.51e-01 | 97.5% | 87.4% |
| 3932467 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 36.0 | 2.80e-01 | 72.2% | 35.7% |
| 3908538 | 2007.9.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › SEFIR | 0.51 | 45.0 | 3.27e-01 | 97.5% | 74.2% |
| 3301314 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.51 | 43.0 | 3.28e-01 | 100.0% | 43.7% |
| 5024241 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.51 | 40.0 | 3.77e-01 | 96.2% | 70.5% |