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IMGVR_UViG_3300003495_000316-3300003495-JGI26244J51143_10018998
Arc-VirIMGVR_UViG_3300003495_000316-3300003495-JGI26244J51143_10018998
Identity
- Kingdom:
- archaea
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-92
Domain cluster:
rep: IMGVR_UViG_3300006327_000127-3300006327-Ga0068499_103979322__D22-92
D2
medium
residues 101-166
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aafA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 56.0 | 4.81e-01 | 92.4% | 92.7% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 5.24e-01 | 89.4% | 100.0% |
| 1tzvA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.64 | 51.0 | 4.08e-01 | 89.4% | 78.7% |
| 2ekfA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 36.0 | 4.22e-01 | 97.0% | 80.4% |
| 2yxlA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.63 | 53.0 | 4.11e-01 | 97.0% | 75.7% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.61 | 54.0 | 4.25e-01 | 100.0% | 82.6% |
| 4pg4A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.59 | 49.0 | 3.76e-01 | 93.9% | 75.8% |
| 1zc6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.59 | 40.0 | 3.06e-01 | 71.2% | 34.0% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.54 | 45.0 | 4.01e-01 | 98.5% | 69.3% |
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 42.0 | 2.93e-01 | 86.4% | 42.1% |
| 1uujA00 | 1.20.960.30 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › | 0.53 | 38.0 | 3.72e-01 | 87.9% | 69.7% |
| 4qloA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 43.0 | 2.76e-01 | 90.9% | 32.1% |
| 4ceiA05 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.51 | 40.0 | 3.11e-01 | 89.4% | 94.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4268334 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 48.0 | 5.51e-01 | 77.3% | 97.8% |
| 4036133 | 101.29.1.0 ↗ | alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like | 0.72 | 50.0 | 5.50e-01 | 87.9% | 96.0% |
| 3704913 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.69 | 39.0 | 4.61e-01 | 92.4% | 82.2% |
| 3741782 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 56.0 | 4.66e-01 | 89.4% | 56.5% |
| 3587004 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.68 | 58.0 | 4.46e-01 | 93.9% | 57.7% |
| 4989162 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.65 | 53.0 | 5.12e-01 | 92.4% | 97.3% |
| 5060818 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.64 | 52.0 | 4.99e-01 | 89.4% | 90.7% |
| 3806585 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 40.0 | 3.94e-01 | 98.5% | 60.0% |
| 3921742 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.60 | 51.0 | 3.57e-01 | 97.0% | 50.4% |
| 3684804 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.58 | 44.0 | 4.67e-01 | 87.9% | 100.0% |
| 3833782 | 109.4.1.1271 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 | 0.58 | 40.0 | 3.15e-01 | 72.7% | 73.8% |
| 4947806 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.40e-01 | 100.0% | 80.0% |
| 3279737 | 564.1.1.4 ↗ | alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › RskA_N | 0.55 | 42.0 | 4.44e-01 | 90.9% | 91.7% |
| 4008641 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.55 | 38.0 | 3.56e-01 | 72.7% | 58.8% |
| None | — | 0.55 | 45.0 | 4.42e-01 | 90.9% | 94.3% | |
| 3566375 | 558.1.1.2 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › FOP_dimer | 0.55 | 45.0 | 4.42e-01 | 90.9% | 94.3% |
| 3278092 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.53 | 39.0 | 3.99e-01 | 84.8% | 92.3% |
| 5022370 | 101.1.1.9 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 | 0.53 | 41.0 | 3.93e-01 | 90.9% | 96.2% |
| 4968016 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.52 | 43.0 | 3.75e-01 | 98.5% | 73.0% |
| 3806710 | 148.1.3.211 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587 | 0.51 | 36.0 | 3.33e-01 | 77.3% | 57.6% |
D3
medium
residues 167-243_316-373
Domain cluster:
rep: IMGVR_UViG_3300035202_000622-3300035202-Ga0373640_0022324_2763_4241__D141-209_317-356
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ostD00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 34.0 | 3.50e-01 | 97.8% | 56.4% |
| 1xszA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.59 | 36.0 | 3.90e-01 | 89.6% | 71.3% |
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.55 | 35.0 | 3.76e-01 | 88.9% | 72.9% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.51 | 37.0 | 3.33e-01 | 100.0% | 53.3% |
| 3eeqA01 | 3.40.50.11220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 27.0 | 2.85e-01 | 91.9% | 54.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082574 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.55 | 36.0 | 3.48e-01 | 100.0% | 56.2% |
| 3887525 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 37.0 | 2.88e-01 | 90.4% | 29.4% |
| 3992384 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.54 | 35.0 | 3.03e-01 | 95.6% | 40.5% |
| 5066595 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.53 | 38.0 | 3.41e-01 | 100.0% | 52.6% |
| 5005960 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.52 | 37.0 | 3.39e-01 | 100.0% | 54.9% |
| 5003779 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 37.0 | 3.02e-01 | 100.0% | 38.9% |
| 5045797 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.51 | 37.0 | 3.35e-01 | 100.0% | 54.2% |
| 4555637 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.51 | 38.0 | 3.49e-01 | 100.0% | 59.4% |
| 5076203 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.51 | 37.0 | 3.33e-01 | 100.0% | 52.8% |
| 3539435 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 35.0 | 2.77e-01 | 87.4% | 30.6% |
| 4314348 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.50 | 39.0 | 3.48e-01 | 100.0% | 57.4% |
| 4969306 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.50 | 38.0 | 3.09e-01 | 100.0% | 40.4% |
D4
medium
residues 244-315_374-487
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 32.0 | 3.84e-01 | 83.9% | 74.2% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 30.0 | 3.93e-01 | 80.1% | 88.3% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 34.0 | 4.10e-01 | 76.9% | 88.5% |
| 3t9oB00 | 1.20.120.30 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain | 0.56 | 34.0 | 4.10e-01 | 81.7% | 92.5% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 24.0 | 3.21e-01 | 84.4% | 80.4% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 34.0 | 4.00e-01 | 92.5% | 94.6% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 33.0 | 4.00e-01 | 81.2% | 99.1% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 34.0 | 3.99e-01 | 82.8% | 95.4% |
| 1o3uA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 33.0 | 4.03e-01 | 86.6% | 100.0% |
| 2okuA00 | 1.20.120.470 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Acyl-CoA dehydrogenase, C-terminal domain | 0.51 | 31.0 | 3.73e-01 | 78.5% | 90.2% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.50 | 33.0 | 3.62e-01 | 83.3% | 79.5% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 145714 | 601.1.1.7 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B | 0.51 | 33.0 | 3.57e-01 | 83.9% | 74.1% |
| 3444302 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.50 | 32.0 | 3.77e-01 | 81.2% | 88.1% |