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IMGVR_UViG_3300003495_000575-3300003495-JGI26244J51143_10007086

Arc-Vir

IMGVR_UViG_3300003495_000575-3300003495-JGI26244J51143_10007086

Identity

Kingdom:
archaea

Quality

73.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
Domain cluster: rep: ALT_09252017_20_scaffold_47_prodigal-single.1__X__X__00239__D183-203_286-357
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rhfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.58e-01 100.0% 76.9%
1bzoA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.60 52.0 4.36e-01 100.0% 98.0%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 43.0 3.75e-01 100.0% 47.2%
3owrA00 2.60.40.4120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.99e-01 89.2% 95.3%
1j4sA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.56 36.0 3.01e-01 80.7% 34.9%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.44e-01 100.0% 75.7%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.55 41.0 4.14e-01 100.0% 81.2%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.89e-01 100.0% 75.0%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.89e-01 100.0% 69.2%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.96e-01 100.0% 84.0%
3it8D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.23e-01 100.0% 81.5%
2xdhA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.73e-01 100.0% 54.3%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.30e-01 100.0% 81.2%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.92e-01 100.0% 58.9%
1qw9A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 43.0 3.77e-01 91.6% 86.5%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.90e-01 100.0% 83.7%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.78e-01 100.0% 79.5%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.93e-01 100.0% 85.9%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.90e-01 100.0% 84.1%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 42.0 2.88e-01 89.2% 85.8%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.67e-01 100.0% 50.9%
5fjqA00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.52 44.0 3.56e-01 100.0% 47.2%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.89e-01 100.0% 88.6%
1akpA00 2.60.40.230 Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like 0.52 44.0 4.07e-01 100.0% 81.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.83e-01 100.0% 83.9%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.52 38.0 3.88e-01 100.0% 85.9%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.83e-01 100.0% 86.6%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.51 43.0 3.62e-01 100.0% 72.7%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 42.0 3.54e-01 88.0% 64.2%
1przA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 44.0 3.45e-01 100.0% 44.1%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.79e-01 100.0% 89.1%
4oy7E00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.51 43.0 3.41e-01 100.0% 95.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949410 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 53.0 4.98e-01 98.8% 91.4%
5056721 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 54.0 4.75e-01 100.0% 86.4%
None — 0.60 43.0 2.61e-01 75.9% 25.9%
5012229 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.29e-01 100.0% 82.5%
3972009 11.1.1.1082 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FimV_N 0.54 47.0 4.36e-01 100.0% 87.3%
3915850 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 45.0 2.85e-01 100.0% 16.6%
434844 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.53 46.0 3.96e-01 100.0% 84.1%
1162405 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.15e-01 100.0% 80.2%
3247874 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 4.26e-01 100.0% 85.9%
3957622 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.53 41.0 4.15e-01 100.0% 86.7%
2667729 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.53 45.0 3.91e-01 100.0% 84.3%
4949866 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.74e-01 100.0% 61.7%
7831 210.1.2.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.53 41.0 2.87e-01 89.2% 85.5%
3702517 11.2.1.87 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SpoV 0.53 46.0 3.85e-01 100.0% 87.3%
3275076 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.53 46.0 4.53e-01 100.0% 93.3%
3250137 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.52 42.0 4.23e-01 100.0% 88.2%
3188090 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.62e-01 100.0% 74.3%
5039604 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 43.0 4.12e-01 100.0% 79.0%
3065879 11.1.1.49 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LPMO_10 0.52 44.0 3.52e-01 100.0% 94.2%
3234136 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 43.0 3.79e-01 100.0% 82.7%
3939997 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 42.0 4.10e-01 100.0% 84.4%
3269882 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.51 44.0 4.23e-01 100.0% 93.0%
4296283 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 42.0 4.19e-01 100.0% 90.6%
4497776 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 41.0 4.22e-01 100.0% 95.0%
4287778 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 41.0 4.05e-01 100.0% 84.4%
4130681 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.51 40.0 4.17e-01 100.0% 98.7%
3485798 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.63e-01 100.0% 78.0%
3246038 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.50 42.0 3.62e-01 100.0% 77.0%
D2 medium residues 119-150
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zcjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.73 56.0 3.59e-01 100.0% 18.5%
4dcuA03 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.71 56.0 4.37e-01 100.0% 50.0%
4p0tB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 55.0 3.60e-01 100.0% 22.7%
1wpqA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.67 50.0 3.22e-01 100.0% 15.7%
3mb2B00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.67 49.0 4.39e-01 100.0% 76.3%
3m21F00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.67 50.0 4.26e-01 100.0% 68.7%
3mixA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.66 49.0 3.55e-01 100.0% 40.0%
4zs9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.65 49.0 3.28e-01 100.0% 21.3%
3ey7A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 48.0 3.51e-01 100.0% 37.2%
3bl4A02 3.40.970.30 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › yp_829618.1 like domains 0.65 47.0 4.47e-01 100.0% 66.7%
3k12D00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.62 44.0 3.30e-01 100.0% 29.2%
3aekA03 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.61 47.0 3.37e-01 100.0% 26.0%
3cvoA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 43.0 2.86e-01 100.0% 17.5%
4l4xA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 46.0 2.56e-01 100.0% 6.2%
2dhmA01 3.30.300.90 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like 0.60 45.0 3.59e-01 100.0% 46.7%
1im8B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 44.0 2.81e-01 100.0% 52.0%
1ri5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 45.0 2.78e-01 100.0% 12.7%
3qleA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.58 43.0 2.88e-01 100.0% 17.6%
2d0bA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 43.0 2.72e-01 100.0% 14.6%
3ds8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 39.0 2.50e-01 96.9% 39.1%
2bh1X00 3.30.300.160 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain 0.56 41.0 3.51e-01 100.0% 44.1%
3vzpC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 41.0 2.58e-01 100.0% 34.4%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 37.0 2.34e-01 100.0% 13.9%
7vw6B02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 35.0 3.21e-01 100.0% 52.9%
2ep8A01 3.40.50.10190 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain 0.51 37.0 3.06e-01 93.8% 35.1%
5aa2B02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 34.0 2.84e-01 100.0% 35.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
164834 2007.1.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Asp_Glu_race 0.69 50.0 3.36e-01 100.0% 18.9%
5081837 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 52.0 3.91e-01 100.0% 31.1%
3466788 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.65 51.0 3.69e-01 100.0% 31.8%
3281178 2003.1.1.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › OCD_Mu_crystall 0.64 49.0 3.19e-01 100.0% 17.3%
3286474 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.64 50.0 3.68e-01 100.0% 32.0%
3656224 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.63 48.0 3.38e-01 100.0% 29.2%
4379634 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 44.0 4.13e-01 100.0% 81.8%
105142 2003.1.11.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.62 46.0 3.49e-01 100.0% 30.4%
5057830 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.61 48.0 3.10e-01 100.0% 17.8%
3717482 2004.1.1.24 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.61 47.0 2.59e-01 100.0% 9.0%
3257876 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.59 49.0 2.98e-01 100.0% 23.3%
4604915 4978.1.1.1 ↗ a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase 0.57 43.0 3.49e-01 100.0% 77.1%
3381693 2004.1.1.428 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom, Helicase_C, HDA2-3 0.57 42.0 2.30e-01 100.0% 8.1%
3496312 211.1.1.17 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.57 44.0 3.93e-01 100.0% 85.5%
3394256 211.1.1.17 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › GLOD4_C 0.56 40.0 3.78e-01 100.0% 87.3%
4629119 7523.1.1.22 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 0.56 41.0 3.02e-01 100.0% 27.5%
3562800 7512.1.1.3 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.55 42.0 2.64e-01 100.0% 13.6%
5012106 101.1.2.25 ↗ alpha arrays › HTH › HTH › winged helix domain › FUR 0.55 37.0 2.71e-01 87.5% 34.8%