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IMGVR_UViG_3300003496_000249-3300003496-JGI26241J51128_10041873
Arc-VirIMGVR_UViG_3300003496_000249-3300003496-JGI26241J51128_10041873
Identity
- Kingdom:
- archaea
Quality
70.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-68
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB08 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.63 | 50.0 | 4.35e-01 | 100.0% | 55.3% |
| 2jx8A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.62 | 43.0 | 4.51e-01 | 88.5% | 83.0% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 46.0 | 4.93e-01 | 86.5% | 100.0% |
| 2yhoE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 42.0 | 3.92e-01 | 96.2% | 61.4% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 42.0 | 4.13e-01 | 94.2% | 78.0% |
| 1wbaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 38.0 | 2.78e-01 | 80.8% | 40.4% |
| 1zunB03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 38.0 | 3.22e-01 | 86.5% | 67.9% |
| 1xp4C02 | 2.60.410.10 | Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain | 0.50 | 35.0 | 3.03e-01 | 75.0% | 90.0% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033455 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.86 | 69.0 | 7.38e-01 | 84.6% | 100.0% |
| 5031239 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.84 | 62.0 | 5.96e-01 | 100.0% | 68.3% |
| 5045676 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.81 | 67.0 | 5.90e-01 | 90.4% | 78.7% |
| 3948622 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 57.0 | 6.09e-01 | 76.9% | 100.0% |
| 5051531 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 57.0 | 6.33e-01 | 94.2% | 100.0% |
| 5057462 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 72.0 | 7.08e-01 | 100.0% | 92.7% |
| 5004736 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 61.0 | 5.93e-01 | 94.2% | 75.9% |
| 4947278 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 64.0 | 6.62e-01 | 92.3% | 95.9% |
| 4934110 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 63.0 | 5.73e-01 | 90.4% | 100.0% |
| 5046714 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.75 | 53.0 | 5.98e-01 | 75.0% | 97.5% |
| 4980029 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 66.0 | 5.29e-01 | 98.1% | 84.0% |
| 5035534 | 375.1.1.213 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS | 0.71 | 47.0 | 5.00e-01 | 84.6% | 80.0% |
| 3329411 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 55.0 | 5.58e-01 | 98.1% | 90.0% |
| 4664970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 48.0 | 5.12e-01 | 73.1% | 88.9% |
| 3827584 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.68 | 59.0 | 4.05e-01 | 100.0% | 33.5% |
| 4934260 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 58.0 | 5.81e-01 | 100.0% | 90.7% |
| 5011387 | 375.1.1.213 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS | 0.67 | 48.0 | 5.08e-01 | 88.5% | 86.7% |
| 4953347 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.65 | 46.0 | 4.77e-01 | 75.0% | 86.0% |
| 3656065 | 376.1.1.74 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_XB3-XBAT31 | 0.65 | 51.0 | 4.09e-01 | 90.4% | 90.9% |
| 4927803 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 49.0 | 5.05e-01 | 80.8% | 84.0% |
| 3268075 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.64 | 50.0 | 4.50e-01 | 92.3% | 73.8% |
| 4461425 | 375.1.1.213 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS | 0.62 | 48.0 | 5.12e-01 | 94.2% | 97.8% |
| 3356255 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 44.0 | 4.05e-01 | 92.3% | 57.1% |
| 3574842 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.62 | 50.0 | 4.09e-01 | 94.2% | 64.8% |
| 3663415 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.60 | 50.0 | 4.83e-01 | 98.1% | 81.7% |
| 4962856 | 375.1.1.349 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26408 | 0.60 | 42.0 | 4.60e-01 | 75.0% | 100.0% |
| 3933471 | 376.1.1.33 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_12 | 0.59 | 49.0 | 4.41e-01 | 94.2% | 72.0% |
| 3995049 | 376.1.1.33 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_12 | 0.56 | 49.0 | 4.07e-01 | 100.0% | 74.7% |
| 3906153 | 376.1.1.29 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 | 0.56 | 46.0 | 4.00e-01 | 100.0% | 62.2% |
| 4185536 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.56 | 47.0 | 2.71e-01 | 94.2% | 29.7% |
| 3403925 | 376.1.1.33 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_12 | 0.55 | 41.0 | 3.49e-01 | 84.6% | 96.8% |
| 1683705 | 376.1.1.33 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_12 | 0.54 | 46.0 | 3.84e-01 | 100.0% | 63.2% |
| 3827209 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.52 | 40.0 | 3.91e-01 | 92.3% | 79.3% |
| 4473885 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.52 | 36.0 | 2.57e-01 | 76.9% | 96.6% |
| 5043745 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.51 | 35.0 | 2.56e-01 | 76.9% | 50.6% |
| 4044129 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.50 | 40.0 | 3.97e-01 | 100.0% | 100.0% |