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IMGVR_UViG_3300003535_000001-3300003535-Ba1_100160812
Arc-VirIMGVR_UViG_3300003535_000001-3300003535-Ba1_100160812
Identity
- Kingdom:
- archaea
Quality
93.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 66-130_165-223_240-256
Domain cluster:
rep: IMGVR_UViG_3300000193_000135-3300000193-SI47jul10_135mDRAFT_10031922__D19-143
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12183.14 best | NotI | 65.4 | 7.20e-18 | 49.6% | 26.9% |
| PF12183.14 | NotI | 56.6 | 3.50e-15 | 46.8% | 30.2% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4f0qA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 48.0 | 4.31e-01 | 90.8% | 61.5% |
| 1iayA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 50.0 | 4.06e-01 | 90.8% | 67.2% |
| 3gl3D00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 36.0 | 3.68e-01 | 87.2% | 63.5% |
| 3rq1A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 49.0 | 4.07e-01 | 92.2% | 71.1% |
| 2f9sB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 35.0 | 3.63e-01 | 87.2% | 64.7% |
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 37.0 | 4.08e-01 | 94.3% | 85.5% |
| 2bgwB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 42.0 | 4.33e-01 | 90.8% | 83.2% |
| 2l5oA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 36.0 | 3.62e-01 | 89.4% | 62.0% |
| 2gb3A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 47.0 | 3.96e-01 | 90.8% | 64.1% |
| 2ejaA00 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.55 | 46.0 | 3.48e-01 | 90.1% | 74.8% |
| 8ffuA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 46.0 | 3.89e-01 | 90.1% | 63.7% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.54 | 45.0 | 3.79e-01 | 87.9% | 92.2% |
| 2zjgA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 46.0 | 3.78e-01 | 91.5% | 63.7% |
| 2ziuB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 42.0 | 4.21e-01 | 91.5% | 79.9% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 39.0 | 4.02e-01 | 90.8% | 78.5% |
| 2ftpA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 46.0 | 3.62e-01 | 92.2% | 71.0% |
| 2douA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.54 | 46.0 | 3.93e-01 | 90.8% | 68.5% |
| 6ll8A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.54 | 34.0 | 3.69e-01 | 70.9% | 75.0% |
| 3sy8C02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 44.0 | 3.61e-01 | 87.9% | 87.7% |
| 3kzpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 44.0 | 3.69e-01 | 87.2% | 97.0% |
| 4ospD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.81e-01 | 94.3% | 90.6% |
| 5jipA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 44.0 | 3.78e-01 | 90.8% | 80.6% |
| 1ii7A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 45.0 | 3.73e-01 | 94.3% | 84.3% |
| 5lddC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 4.17e-01 | 92.2% | 83.9% |
| 3n2qA02 | 3.30.300.190 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.51 | 40.0 | 4.32e-01 | 85.8% | 99.1% |
| 3m1rB01 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.51 | 42.0 | 3.29e-01 | 87.2% | 97.6% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.51 | 40.0 | 3.75e-01 | 89.4% | 66.3% |
| 2r47A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 41.0 | 4.17e-01 | 86.5% | 98.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043832 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.70 | 54.0 | 5.84e-01 | 94.3% | 95.8% |
| 4032115 | 2008.1.1.102 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF1829 | 0.69 | 53.0 | 5.68e-01 | 90.8% | 92.5% |
| 4968040 | 2008.1.1.235 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF26618 | 0.67 | 54.0 | 5.66e-01 | 92.2% | 93.8% |
| 2983287 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 52.0 | 5.36e-01 | 92.2% | 90.2% |
| 4514544 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.62 | 54.0 | 5.37e-01 | 92.2% | 89.0% |
| 3176422 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.62 | 47.0 | 4.02e-01 | 79.4% | 87.0% |
| 4959341 | 2008.1.1.152 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 | 0.62 | 44.0 | 4.70e-01 | 91.5% | 83.2% |
| 5032511 | 2008.1.1.226 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_EcoO109I | 0.61 | 41.0 | 3.47e-01 | 90.1% | 41.3% |
| 3737532 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.61 | 46.0 | 3.99e-01 | 78.0% | 85.1% |
| 4956819 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 45.0 | 5.07e-01 | 89.4% | 99.1% |
| 3989767 | 2008.1.1.152 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2130 | 0.60 | 51.0 | 4.67e-01 | 91.5% | 70.0% |
| 5081823 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 47.0 | 4.85e-01 | 92.9% | 86.7% |
| 4324611 | 2008.1.1.166 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_XcyI | 0.60 | 52.0 | 3.97e-01 | 92.2% | 43.2% |
| 3196647 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 51.0 | 4.75e-01 | 92.2% | 80.6% |
| 4946094 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.57 | 48.0 | 3.78e-01 | 90.8% | 84.3% |
| 3593046 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 42.0 | 4.18e-01 | 90.8% | 72.7% |
| 4974231 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 52.0 | 4.75e-01 | 100.0% | 76.2% |
| 3344156 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.56 | 48.0 | 4.28e-01 | 90.8% | 74.4% |
| 5040670 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.56 | 36.0 | 3.64e-01 | 87.2% | 64.3% |
| 3969109 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.56 | 39.0 | 3.13e-01 | 70.9% | 54.4% |
| 4385311 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.55 | 47.0 | 3.94e-01 | 90.8% | 74.5% |
| 3493215 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.55 | 38.0 | 3.37e-01 | 87.9% | 49.0% |
| 3172340 | 2004.1.1.132 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DLIC | 0.55 | 50.0 | 4.16e-01 | 100.0% | 88.6% |
| 4029300 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.54 | 42.0 | 3.70e-01 | 80.9% | 94.2% |
| 4385490 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.54 | 46.0 | 3.90e-01 | 90.8% | 78.7% |
| 4946370 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.54 | 47.0 | 3.74e-01 | 94.3% | 80.7% |
| 3846390 | 2008.1.1.84 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector | 0.54 | 47.0 | 4.11e-01 | 100.0% | 61.9% |
| 3266262 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.54 | 45.0 | 3.87e-01 | 89.4% | 80.5% |
| 4927513 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.54 | 47.0 | 3.77e-01 | 92.9% | 84.8% |
| 4241367 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 44.0 | 4.34e-01 | 92.2% | 80.6% |
| 4946126 | 246.3.1.26 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › fn3 | 0.54 | 46.0 | 3.70e-01 | 94.3% | 80.0% |
| 3389112 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 45.0 | 4.05e-01 | 90.8% | 70.3% |
| 2417505 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.53 | 46.0 | 3.63e-01 | 92.2% | 76.6% |
| 3912082 | 2008.1.1.84 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector | 0.53 | 48.0 | 4.17e-01 | 100.0% | 67.4% |
| 3895610 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 45.0 | 3.87e-01 | 92.2% | 85.5% |
| 3260070 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.52 | 44.0 | 4.00e-01 | 90.8% | 75.8% |
| 4963974 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 44.0 | 3.37e-01 | 91.5% | 94.0% |
| 3665750 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.52 | 42.0 | 3.15e-01 | 91.5% | 34.1% |
| 5046282 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 43.0 | 4.11e-01 | 91.5% | 85.5% |
| 3684733 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.50 | 44.0 | 3.80e-01 | 96.5% | 87.6% |
D2
medium
residues 1-65_131-164_224-239
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 28.0 | 2.91e-01 | 86.1% | 47.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5079788 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.83 | 79.0 | 5.73e-01 | 100.0% | 92.6% |
| 4967062 | 2008.1.1.222 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NotI | 0.63 | 60.0 | 4.63e-01 | 98.3% | 92.4% |