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IMGVR_UViG_3300003601_000143-3300003601-JGI26382J51730_100229516

Arc-Vir

IMGVR_UViG_3300003601_000143-3300003601-JGI26382J51730_100229516

Identity

Kingdom:
archaea

Quality

87.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 11-69
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3netB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 54.0 4.57e-01 100.0% 93.9%
1i7qA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.60 49.0 2.92e-01 94.9% 86.1%
3dzvA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 49.0 3.32e-01 98.3% 74.2%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 48.0 3.15e-01 96.6% 51.9%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 48.0 3.17e-01 96.6% 43.5%
1c3qA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 45.0 3.04e-01 98.3% 69.7%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.55 37.0 3.00e-01 72.9% 66.4%
4j4hA01 3.40.50.12150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 3.31e-01 86.4% 42.2%
4g1gA02 2.70.20.60 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain 0.53 37.0 2.79e-01 76.3% 95.9%
4mchA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.53 43.0 2.97e-01 96.6% 49.4%
5dn8A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 43.0 3.30e-01 100.0% 69.9%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 35.0 2.64e-01 72.9% 79.1%
3nuwA02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.50 37.0 2.75e-01 88.1% 89.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015183 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.71 56.0 4.53e-01 84.7% 57.3%
5070073 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.71 53.0 4.34e-01 79.7% 57.1%
4886650 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.70 55.0 4.83e-01 84.7% 62.4%
3165815 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.63 52.0 3.38e-01 100.0% 56.4%
4952606 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 50.0 3.32e-01 100.0% 57.9%
4292792 2003.6.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK 0.61 50.0 3.34e-01 98.3% 70.9%
5028564 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.45e-01 72.9% 45.0%
5036879 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.59 49.0 3.26e-01 100.0% 64.4%
4944328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.29e-01 76.3% 43.8%
4968561 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.57 38.0 2.73e-01 71.2% 24.9%
5000950 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.56 43.0 3.43e-01 88.1% 90.4%
3930313 207.1.1.156 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.56 45.0 2.71e-01 94.9% 37.6%
5001238 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 3.23e-01 72.9% 48.2%
3755591 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 38.0 3.74e-01 72.9% 67.7%
4554426 3097.1.1.1 ↗ a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C 0.54 42.0 4.33e-01 86.4% 92.6%
4416928 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 44.0 3.05e-01 100.0% 57.6%
5073814 4294.1.1.2 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Trm112p 0.53 40.0 2.71e-01 100.0% 21.8%
3361215 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.52 33.0 3.29e-01 89.8% 61.7%
3170313 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.52 43.0 2.62e-01 100.0% 31.9%
4954210 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.50 40.0 2.85e-01 93.2% 34.3%