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IMGVR_UViG_3300003618_000062-3300003618-JGI26381J51731_100181611
Arc-VirIMGVR_UViG_3300003618_000062-3300003618-JGI26381J51731_100181611
Identity
- Kingdom:
- archaea
Quality
72.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-108_581-592
D2
high
residues 189-201_219-267_465-525
Domain cluster:
representative
CATH (59)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.70 | 48.0 | 5.49e-01 | 100.0% | 94.6% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 40.0 | 4.72e-01 | 82.1% | 81.2% |
| 4ecnA01 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.69 | 39.0 | 4.25e-01 | 81.3% | 66.0% |
| 3wdhA01 | 2.60.40.2320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 41.0 | 4.56e-01 | 87.0% | 77.1% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.67 | 47.0 | 5.11e-01 | 100.0% | 86.5% |
| 4wqmA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.67 | 47.0 | 5.21e-01 | 100.0% | 91.8% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 48.0 | 5.30e-01 | 100.0% | 97.0% |
| 2qggA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.64 | 42.0 | 4.76e-01 | 100.0% | 88.2% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 44.0 | 5.03e-01 | 88.6% | 100.0% |
| 1krhA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 48.0 | 5.28e-01 | 100.0% | 100.0% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.62 | 42.0 | 4.27e-01 | 91.9% | 68.8% |
| 5e6tA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.62 | 44.0 | 4.94e-01 | 100.0% | 96.8% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 41.0 | 4.72e-01 | 98.4% | 100.0% |
| 5tr9A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 45.0 | 4.93e-01 | 98.4% | 97.9% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 41.0 | 4.28e-01 | 92.7% | 76.1% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 46.0 | 5.01e-01 | 98.4% | 98.0% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 48.0 | 5.07e-01 | 100.0% | 95.5% |
| 2zl7A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.60 | 42.0 | 4.73e-01 | 100.0% | 96.7% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 46.0 | 4.89e-01 | 100.0% | 94.3% |
| 2r0lA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 43.0 | 4.45e-01 | 92.7% | 80.5% |
| 1wf1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 30.0 | 3.44e-01 | 78.9% | 64.4% |
| 4m8rA01 | 2.60.40.3920 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 41.0 | 4.39e-01 | 89.4% | 85.4% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 30.0 | 3.62e-01 | 77.2% | 74.1% |
| 4g1vA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.58 | 49.0 | 5.07e-01 | 100.0% | 95.8% |
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 30.0 | 3.69e-01 | 78.0% | 80.0% |
| 1wzlA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 40.0 | 4.05e-01 | 99.2% | 71.9% |
| 1wwhA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 31.0 | 3.85e-01 | 81.3% | 85.1% |
| 1ylnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 41.0 | 4.21e-01 | 86.2% | 78.9% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.57 | 42.0 | 4.41e-01 | 93.5% | 84.7% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 44.0 | 4.77e-01 | 100.0% | 98.1% |
| 3hz2A00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.57 | 31.0 | 3.64e-01 | 99.2% | 76.2% |
| 1ix2A00 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 38.0 | 4.08e-01 | 89.4% | 82.4% |
| 1a8pA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 41.0 | 4.50e-01 | 97.6% | 98.9% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 4.85e-01 | 100.0% | 98.2% |
| 4lk4A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 35.0 | 3.53e-01 | 89.4% | 61.6% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 4.28e-01 | 98.4% | 90.2% |
| 1imhC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 38.0 | 4.00e-01 | 89.4% | 81.1% |
| 1l3kA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 31.0 | 3.70e-01 | 79.7% | 81.0% |
| 1hxmB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 37.0 | 3.95e-01 | 87.0% | 81.0% |
| 5jtwA01 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.54 | 40.0 | 3.92e-01 | 88.6% | 69.1% |
| 1ufwA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 32.0 | 3.58e-01 | 79.7% | 75.8% |
| 5axgA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 39.0 | 3.88e-01 | 100.0% | 73.0% |
| 2b5iC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.74e-01 | 87.0% | 81.2% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 39.0 | 4.08e-01 | 79.7% | 85.3% |
| 1n26A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.91e-01 | 100.0% | 83.2% |
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 37.0 | 3.33e-01 | 100.0% | 51.4% |
| 2m83A00 | 2.60.40.2440 | Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain | 0.52 | 41.0 | 3.96e-01 | 95.9% | 74.1% |
| 5z0uA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.82e-01 | 99.2% | 76.6% |
| 4oevA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.51 | 40.0 | 4.15e-01 | 99.2% | 88.7% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.51 | 37.0 | 3.57e-01 | 100.0% | 65.7% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 40.0 | 3.26e-01 | 100.0% | 44.2% |
| 1zu0A02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.51 | 40.0 | 4.28e-01 | 99.2% | 97.2% |
| 3szeA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 39.0 | 3.00e-01 | 82.9% | 76.9% |
| 1jeyB02 | 2.40.290.10 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › | 0.51 | 38.0 | 3.30e-01 | 79.7% | 91.5% |
| 1xocA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.51 | 40.0 | 4.08e-01 | 99.2% | 86.7% |
| 3kg5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 33.0 | 3.54e-01 | 88.6% | 78.6% |
| 4cp8E00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.50 | 39.0 | 2.73e-01 | 83.7% | 95.1% |
| 3uxfA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.85e-01 | 95.1% | 69.3% |
| 2ghpA03 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 28.0 | 3.36e-01 | 77.2% | 81.7% |
ECOD (72)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3267872 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 50.0 | 4.99e-01 | 100.0% | 70.0% |
| 3868227 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 46.0 | 5.11e-01 | 99.2% | 88.4% |
| 4864011 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.67 | 49.0 | 5.28e-01 | 100.0% | 89.5% |
| 3728657 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 47.0 | 5.39e-01 | 95.1% | 100.0% |
| 4405079 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 42.0 | 4.73e-01 | 100.0% | 85.3% |
| 4381495 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.65 | 43.0 | 4.86e-01 | 100.0% | 91.1% |
| 4493188 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.64 | 43.0 | 4.76e-01 | 100.0% | 87.4% |
| 4592324 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.64 | 43.0 | 4.93e-01 | 100.0% | 94.4% |
| 3931783 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.64 | 47.0 | 5.18e-01 | 100.0% | 98.9% |
| 3744112 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.64 | 51.0 | 5.35e-01 | 100.0% | 94.5% |
| 4138546 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 42.0 | 4.77e-01 | 100.0% | 91.1% |
| 4161622 | 1.1.7.70 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II | 0.63 | 39.0 | 4.80e-01 | 81.3% | 100.0% |
| 4619658 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 42.0 | 4.68e-01 | 100.0% | 87.4% |
| 4163756 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.63 | 42.0 | 4.67e-01 | 100.0% | 87.4% |
| 3965887 | 11.1.1.457 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixH | 0.63 | 43.0 | 4.55e-01 | 98.4% | 81.0% |
| 3966626 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 41.0 | 4.70e-01 | 100.0% | 91.1% |
| 4492958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 49.0 | 5.25e-01 | 100.0% | 97.1% |
| 3741028 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.62 | 48.0 | 5.17e-01 | 100.0% | 95.2% |
| 4959737 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.62 | 33.0 | 3.82e-01 | 82.1% | 71.8% |
| 3707901 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.62 | 47.0 | 5.05e-01 | 100.0% | 95.2% |
| 3611195 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.62 | 48.0 | 5.02e-01 | 100.0% | 91.8% |
| 4091759 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 48.0 | 5.19e-01 | 100.0% | 98.1% |
| 3699180 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.61 | 47.0 | 4.74e-01 | 100.0% | 80.0% |
| 3700851 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 32.0 | 3.68e-01 | 79.7% | 67.8% |
| 3711918 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.61 | 38.0 | 3.86e-01 | 82.1% | 61.6% |
| 3279212 | 1.1.7.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_9 | 0.61 | 47.0 | 4.98e-01 | 100.0% | 92.7% |
| 4636051 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.60 | 45.0 | 4.78e-01 | 100.0% | 90.5% |
| 4011994 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 48.0 | 5.07e-01 | 100.0% | 95.5% |
| 4929404 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 47.0 | 4.99e-01 | 97.6% | 96.2% |
| 3324420 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.60 | 46.0 | 4.81e-01 | 89.4% | 90.0% |
| 1161129 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 45.0 | 4.70e-01 | 92.7% | 86.6% |
| 4537757 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 47.0 | 4.83e-01 | 100.0% | 86.7% |
| 4286344 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.60 | 41.0 | 4.57e-01 | 100.0% | 91.6% |
| 4012802 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 47.0 | 4.94e-01 | 100.0% | 94.5% |
| 3224730 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 47.0 | 4.93e-01 | 100.0% | 94.5% |
| 3264859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 40.0 | 4.29e-01 | 89.4% | 81.0% |
| 3215950 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 30.0 | 3.55e-01 | 78.9% | 69.4% |
| 3371896 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.59 | 46.0 | 4.72e-01 | 89.4% | 86.6% |
| 3552831 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.59 | 47.0 | 4.99e-01 | 100.0% | 99.0% |
| 4181458 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.59 | 48.0 | 5.08e-01 | 100.0% | 99.1% |
| 3187444 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.58 | 49.0 | 5.13e-01 | 100.0% | 97.4% |
| 3494162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 41.0 | 4.26e-01 | 87.8% | 78.3% |
| 4400928 | 1.1.7.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase | 0.58 | 42.0 | 4.21e-01 | 100.0% | 73.6% |
| 3756436 | 304.9.1.120 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4523 | 0.57 | 30.0 | 3.46e-01 | 78.0% | 67.8% |
| 4599558 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 41.0 | 4.63e-01 | 97.6% | 100.0% |
| 3731972 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.57 | 46.0 | 4.59e-01 | 100.0% | 83.1% |
| 3218022 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 33.0 | 3.83e-01 | 79.7% | 81.2% |
| 4944073 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 4.21e-01 | 88.6% | 80.0% |
| 3664467 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.56 | 46.0 | 4.60e-01 | 89.4% | 88.5% |
| 3708173 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.56 | 46.0 | 4.40e-01 | 89.4% | 78.6% |
| 3697378 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 31.0 | 3.26e-01 | 81.3% | 59.1% |
| 4136251 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.56 | 42.0 | 4.52e-01 | 91.1% | 94.3% |
| 3800133 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.56 | 38.0 | 4.09e-01 | 89.4% | 85.0% |
| 3732283 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.55 | 45.0 | 4.62e-01 | 87.8% | 95.8% |
| 3309889 | 11.1.4.78 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_8th | 0.55 | 32.0 | 3.47e-01 | 81.3% | 65.7% |
| 3181266 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.55 | 45.0 | 4.71e-01 | 89.4% | 97.4% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 50.0 | 4.97e-01 | 100.0% | 97.6% |
| 5024522 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 50.0 | 4.51e-01 | 100.0% | 98.2% |
| 3992542 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.55 | 37.0 | 3.88e-01 | 88.6% | 74.8% |
| 5082302 | 11.1.1.214 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N | 0.55 | 38.0 | 4.03e-01 | 100.0% | 81.8% |
| 4970090 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 4.08e-01 | 88.6% | 81.7% |
| 3256764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 49.0 | 4.86e-01 | 100.0% | 97.7% |
| 3542453 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.54 | 40.0 | 4.04e-01 | 94.3% | 76.8% |
| 3622522 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.54 | 41.0 | 4.09e-01 | 94.3% | 77.6% |
| 4977991 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 45.0 | 4.51e-01 | 100.0% | 87.7% |
| 3186464 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 48.0 | 4.65e-01 | 98.4% | 94.8% |
| 3609230 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 40.0 | 3.82e-01 | 79.7% | 82.1% |
| 3838331 | 11.1.1.456 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YtkA | 0.53 | 37.0 | 3.93e-01 | 95.1% | 83.8% |
| 3956579 | 11.1.1.949 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 | 0.53 | 43.0 | 4.17e-01 | 99.2% | 80.0% |
| 1291147 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.52 | 41.0 | 3.96e-01 | 95.9% | 74.1% |
| 4964141 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.52 | 35.0 | 4.03e-01 | 100.0% | 94.4% |
| 5024617 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.52 | 35.0 | 3.92e-01 | 100.0% | 89.5% |
D3
high
residues 635-744
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 44.0 | 5.32e-01 | 70.9% | 98.6% |
| 3gehA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.66 | 50.0 | 4.29e-01 | 78.2% | 60.5% |
| 4d8mA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.65 | 46.0 | 3.59e-01 | 71.8% | 40.7% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.63 | 47.0 | 5.32e-01 | 85.5% | 100.0% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 45.0 | 4.27e-01 | 76.4% | 89.8% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.61 | 43.0 | 4.06e-01 | 73.6% | 77.4% |
| 3ay5A01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.61 | 52.0 | 4.84e-01 | 100.0% | 75.2% |
| 3c8eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 44.0 | 3.95e-01 | 77.3% | 73.2% |
| 7e84A02 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.56 | 43.0 | 3.97e-01 | 80.0% | 66.2% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 46.0 | 4.61e-01 | 94.5% | 88.2% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.52 | 43.0 | 4.30e-01 | 97.3% | 85.8% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4500042 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.67 | 46.0 | 2.90e-01 | 70.0% | 34.7% |
| 3615191 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.66 | 47.0 | 3.92e-01 | 87.3% | 44.4% |
| 4320634 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 46.0 | 3.34e-01 | 71.8% | 27.7% |
| 4644550 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.62 | 46.0 | 3.93e-01 | 77.3% | 88.4% |
| 4276914 | 3782.1.1.1 ↗ | a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › TLV_coat | 0.60 | 42.0 | 4.06e-01 | 70.9% | 76.7% |
| 3843567 | 3554.1.1.4 ↗ | a+b duplicates or obligate multimers › protein of unknown function (eca1910) › protein of unknown function (eca1910) › protein of unknown function (eca1910) › TF_AP-2 | 0.58 | 50.0 | 4.88e-01 | 94.5% | 88.3% |
| 3660496 | 604.3.1.19 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF3475 | 0.53 | 48.0 | 3.81e-01 | 100.0% | 90.7% |
D4
medium
residues 152-188_529-580
D5
medium
residues 280-459
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ug7A00 | 1.20.120.360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Axin interactor, dorsalization-associated protein, N-terminal domain | 0.51 | 34.0 | 3.97e-01 | 72.2% | 96.1% |