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IMGVR_UViG_3300003619_000225-3300003619-JGI26380J51729_100059071
Arc-VirIMGVR_UViG_3300003619_000225-3300003619-JGI26380J51729_100059071
Identity
- Kingdom:
- archaea
Quality
78.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-77
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6lpfA01 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.63 | 41.0 | 3.21e-01 | 94.8% | 31.3% |
| 4l4qB01 | 3.30.300.280 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › S-adenosylmethionine synthetase, C-terminal domain | 0.63 | 38.0 | 3.08e-01 | 80.5% | 32.4% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.58 | 49.0 | 4.00e-01 | 92.2% | 50.7% |
| 1e3mB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.58 | 47.0 | 3.81e-01 | 88.3% | 81.6% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 46.0 | 3.81e-01 | 87.0% | 71.0% |
| 4n81A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.58 | 37.0 | 3.00e-01 | 75.3% | 36.0% |
| 3kdqA00 | 6.10.320.10 | Special › Helix non-globular › Ferritin › | 0.54 | 43.0 | 3.41e-01 | 92.2% | 42.8% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3655858 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.68 | 44.0 | 3.45e-01 | 88.3% | 32.9% |
| 3597578 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.65 | 58.0 | 3.84e-01 | 100.0% | 62.8% |
| 1016743 | 3255.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP | 0.65 | 40.0 | 3.59e-01 | 77.9% | 45.4% |
| 3593719 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.64 | 51.0 | 3.75e-01 | 83.1% | 35.1% |
| 3463832 | 386.1.1.334 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Utp11 | 0.64 | 50.0 | 4.09e-01 | 80.5% | 48.5% |
| 3993742 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.63 | 53.0 | 4.34e-01 | 89.6% | 92.6% |
| 4978597 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.63 | 46.0 | 3.45e-01 | 98.7% | 31.9% |
| 5063700 | 3843.1.1.32 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › CstA | 0.60 | 47.0 | 4.03e-01 | 87.0% | 76.2% |
| 2447204 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.59 | 31.0 | 2.99e-01 | 88.3% | 44.8% |
| 3284427 | 1031.1.1.1 ↗ | a+b complex topology › Rifampin phosphotransferase RPH-Lm middle domain › Rifampin phosphotransferase RPH-Lm middle domain › Rifampin phosphotransferase RPH-Lm middle domain › Rph_4th | 0.57 | 44.0 | 2.80e-01 | 96.1% | 16.5% |
| 5013274 | 5011.1.1.0 ↗ | extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa | 0.56 | 43.0 | 4.24e-01 | 84.4% | 88.2% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.54 | 42.0 | 4.11e-01 | 97.4% | 77.6% |
| 4028685 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 50.0 | 4.39e-01 | 100.0% | 73.6% |
| 3737988 | 109.4.1.1316 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf, HAT_PRP39_N, HAT_PRP39_C | 0.54 | 47.0 | 2.74e-01 | 100.0% | 12.2% |
| 4507260 | 3255.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP | 0.53 | 35.0 | 3.21e-01 | 70.1% | 49.5% |
| 5061382 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.51 | 35.0 | 3.63e-01 | 71.4% | 84.3% |