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IMGVR_UViG_3300003619_000385-3300003619-JGI26380J51729_1000203617

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300003619_000385-3300003619-JGI26380J51729_1000203617 ↗
Kingdom:: archaea

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-59

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6qv3A05	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.71	50.0	4.14e-01	75.9%	43.0%
3vm9A02	6.10.140.2110	Special › Helix non-globular › Helix Hairpins ›	0.70	45.0	4.44e-01	70.4%	63.2%
1id3G00	1.10.20.10	Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A	0.68	46.0	3.74e-01	72.2%	37.0%
1icrA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.64	44.0	2.93e-01	72.2%	32.9%
4n1vA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.62	44.0	3.81e-01	81.5%	46.2%
2d8cA01	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.61	38.0	3.45e-01	72.2%	44.7%
3g2bA00	1.10.10.1150	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD)	0.60	41.0	3.50e-01	77.8%	42.2%
3a2pA00	3.90.1300.10	Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain	0.60	47.0	2.76e-01	87.0%	59.8%
3q9vA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	42.0	3.53e-01	79.6%	43.9%
1dvpA01	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	44.0	3.30e-01	92.6%	71.4%
3u9jA00	1.20.120.520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like	0.52	43.0	3.06e-01	88.9%	56.1%
3u7iA00	3.40.50.360	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain	0.50	42.0	2.85e-01	96.3%	28.9%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3932505	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.80	55.0	4.78e-01	72.2%	50.0%
4010438	616.1.1.40 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF1315	0.72	44.0	4.46e-01	70.4%	61.8%
4169890	5.1.11.6 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta_propel	0.68	43.0	2.45e-01	79.6%	6.5%
3340029	101.1.1.176 ↗	alpha arrays › HTH › HTH › Three-helical HTH › DEK_C	0.65	46.0	4.15e-01	77.8%	54.7%
3174047	195.1.1.0 ↗	alpha complex topology › NusB-like › NusB-like › NusB-like	0.62	44.0	3.50e-01	79.6%	33.6%
4998812	101.1.2.141 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_24	0.55	35.0	3.36e-01	74.1%	52.3%
3533062	110.1.1.0 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain	0.54	39.0	3.45e-01	85.2%	47.4%
2906440	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.54	45.0	4.15e-01	96.3%	91.8%
3515490	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.53	35.0	3.30e-01	70.4%	50.7%
4475717	2498.1.1.22 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY	0.51	42.0	3.02e-01	94.4%	55.9%
4999010	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	37.0	3.21e-01	77.8%	60.2%