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IMGVR_UViG_3300003830_000080-3300003830-Ga0051980_1000195912

Arc-Vir

IMGVR_UViG_3300003830_000080-3300003830-Ga0051980_1000195912

Identity

Kingdom:
archaea

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-56
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.64 44.0 4.60e-01 72.2% 91.7%
7ahhC02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.63 45.0 3.64e-01 81.5% 39.0%
1vr9A01 3.90.1280.20 Alpha Beta › Alpha-Beta Complex › CBS domain Like › 0.60 40.0 3.80e-01 79.6% 57.8%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.60 48.0 3.71e-01 90.7% 92.1%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 44.0 2.95e-01 81.5% 33.8%
3qokA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 39.0 3.33e-01 70.4% 44.3%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.14e-01 85.2% 28.8%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 42.0 3.41e-01 81.5% 40.2%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 44.0 4.08e-01 90.7% 97.4%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 42.0 2.87e-01 81.5% 45.3%
1h54A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 45.0 2.73e-01 87.0% 38.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.56 46.0 3.52e-01 100.0% 78.9%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 38.0 2.80e-01 72.2% 38.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 41.0 3.77e-01 83.3% 88.0%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 38.0 2.96e-01 83.3% 31.5%
3kpbA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 38.0 3.07e-01 83.3% 35.3%
2r6fA04 1.10.8.280 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › ABC transporter ATPase domain-like 0.54 45.0 3.65e-01 100.0% 83.9%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 38.0 3.59e-01 75.9% 62.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 38.0 3.24e-01 77.8% 46.5%
3uhjC01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 37.0 2.71e-01 74.1% 74.3%
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.53 35.0 3.10e-01 92.6% 45.7%
4qi3A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.53 42.0 3.01e-01 100.0% 64.3%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 2.96e-01 98.1% 86.1%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 35.0 2.81e-01 74.1% 48.9%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.51 37.0 3.04e-01 79.6% 84.7%
5wq5A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.60e-01 74.1% 74.8%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 37.0 2.87e-01 79.6% 33.1%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 33.0 3.36e-01 72.2% 66.1%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998167 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.79 52.0 3.31e-01 75.9% 14.8%
3927135 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.75 52.0 3.18e-01 81.5% 12.2%
4670865 7516.1.1.24 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.73 48.0 3.02e-01 81.5% 13.7%
3401112 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.67 47.0 4.58e-01 75.9% 80.0%
3604410 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.66 50.0 3.54e-01 83.3% 52.2%
3604686 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 3.54e-01 72.2% 65.7%
3922240 3755.3.1.321 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WHAMM-JMY_N 0.63 46.0 3.77e-01 81.5% 41.8%
3256959 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.63 43.0 4.02e-01 72.2% 80.0%
5065934 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 43.0 3.77e-01 72.2% 83.5%
3750584 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.61 48.0 3.88e-01 90.7% 79.1%
3929346 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.61 47.0 3.68e-01 85.2% 69.2%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.56e-01 81.5% 41.7%
3451565 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.59 48.0 3.73e-01 100.0% 55.6%
4033826 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 4.17e-01 100.0% 65.3%
3627778 220.1.1.64 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.58 41.0 3.49e-01 77.8% 47.0%
1240179 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.58 43.0 4.02e-01 81.5% 76.5%
4034031 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.58 41.0 3.93e-01 75.9% 90.8%
4115593 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.57 42.0 2.66e-01 81.5% 20.0%
3593031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 2.89e-01 75.9% 45.7%
3534813 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.56 39.0 3.73e-01 77.8% 84.3%
None — 0.56 38.0 2.47e-01 83.3% 13.9%
3626927 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.55 39.0 3.93e-01 81.5% 74.5%
4297945 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.55 37.0 3.75e-01 70.4% 81.8%
5031972 109.2.1.18 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › GDE_C 0.55 45.0 2.76e-01 100.0% 91.5%
4197449 109.2.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like 0.54 42.0 2.65e-01 98.1% 89.3%
5077064 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.54 40.0 2.58e-01 81.5% 20.0%
4404109 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.87e-01 85.2% 84.3%
1694878 109.2.1.16 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › LANC_like 0.54 43.0 2.77e-01 100.0% 86.9%
3632189 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 40.0 3.85e-01 85.2% 67.7%
4029439 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.54 38.0 3.64e-01 79.6% 79.7%
4152738 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.54 45.0 4.16e-01 100.0% 74.7%
4951211 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 37.0 3.01e-01 85.2% 33.3%
4172592 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.53 41.0 3.66e-01 85.2% 73.8%
4974065 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.52 36.0 3.50e-01 77.8% 61.7%
4004358 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.52 39.0 4.02e-01 87.0% 96.0%
3812379 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.52 41.0 2.81e-01 94.4% 38.7%
4284001 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.51 38.0 3.55e-01 87.0% 89.3%
3515810 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 42.0 2.67e-01 94.4% 27.9%
5022340 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 35.0 3.33e-01 75.9% 58.6%
3501894 2.1.1.39 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rbc25 0.50 36.0 2.98e-01 85.2% 94.4%