Back to structures

IMGVR_UViG_3300003830_000080-3300003830-Ga0051980_1000195919

Arc-Vir

IMGVR_UViG_3300003830_000080-3300003830-Ga0051980_1000195919

Quality

79.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66_68-83
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 63.0 6.75e-01 78.8% 98.6%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 62.0 5.22e-01 82.5% 49.6%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 60.0 6.56e-01 77.5% 98.5%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 59.0 5.83e-01 77.5% 78.8%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 57.0 6.37e-01 76.2% 96.7%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.05e-01 76.2% 98.6%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 5.89e-01 76.2% 82.2%
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 56.0 5.43e-01 80.0% 67.4%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 61.0 5.10e-01 83.7% 53.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 59.0 4.83e-01 83.7% 46.4%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 55.0 5.91e-01 75.0% 92.8%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 5.82e-01 76.2% 83.6%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 5.98e-01 76.2% 92.2%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 60.0 4.92e-01 82.5% 53.3%
2f2eA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 58.0 5.54e-01 80.0% 73.6%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.52e-01 80.0% 72.4%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 4.59e-01 83.7% 44.6%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 57.0 5.44e-01 80.0% 69.9%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 5.21e-01 86.3% 74.2%
2hs5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.77e-01 75.0% 92.5%
3fx3B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 53.0 5.01e-01 75.0% 69.5%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 4.56e-01 71.2% 55.0%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.96e-01 78.8% 96.9%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 5.27e-01 85.0% 68.7%
3by6C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 5.17e-01 75.0% 81.8%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 54.0 5.85e-01 97.5% 100.0%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 52.0 5.22e-01 78.8% 77.8%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 4.71e-01 91.3% 79.2%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 49.0 5.28e-01 75.0% 92.5%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.82e-01 75.0% 74.1%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 5.07e-01 75.0% 86.3%
4xr7E01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.66 45.0 3.03e-01 71.2% 44.5%
2doaA00 1.10.10.2670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase 0.65 45.0 4.13e-01 73.8% 54.8%
7pmpA01 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.56 35.0 3.65e-01 100.0% 67.6%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 50.0 4.83e-01 100.0% 98.9%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 48.0 3.80e-01 96.2% 57.2%
1d5tA03 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.55 42.0 3.90e-01 83.7% 84.8%
3m5bA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.53 44.0 4.04e-01 95.0% 96.3%
2xv9A00 1.10.533.30 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Nematode polyprotein allergen ABA-1 0.53 36.0 3.15e-01 71.2% 89.6%
1zxhA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 33.0 3.88e-01 100.0% 92.9%
4fqdB02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.52 40.0 3.07e-01 86.3% 88.4%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.87 74.0 7.11e-01 90.0% 90.0%
3781962 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.84 61.0 6.71e-01 76.2% 100.0%
5034272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 60.0 5.90e-01 80.0% 70.6%
5074663 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 62.0 6.05e-01 77.5% 80.0%
5065189 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.82 58.0 5.38e-01 76.2% 59.0%
5031878 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.81 59.0 6.63e-01 76.2% 100.0%
5036922 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.81 62.0 5.18e-01 80.0% 50.0%
5031004 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.81 58.0 5.68e-01 76.2% 69.4%
3593170 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 57.0 5.96e-01 73.8% 84.0%
5078990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 57.0 6.44e-01 73.8% 100.0%
4942968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 59.0 6.28e-01 76.2% 88.4%
3969964 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.80 57.0 5.64e-01 76.2% 70.6%
5023661 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.80 64.0 5.43e-01 86.3% 62.8%
4951198 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.79 60.0 5.14e-01 78.8% 53.3%
4947694 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.79 61.0 5.00e-01 81.2% 47.9%
4928978 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 60.0 5.66e-01 80.0% 70.5%
3943470 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.79 57.0 5.60e-01 76.2% 70.6%
5030545 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.79 59.0 4.85e-01 78.8% 45.0%
4933412 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.79 63.0 5.10e-01 85.0% 46.9%
None 0.79 57.0 4.70e-01 75.0% 45.2%
4957063 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 62.0 6.25e-01 87.5% 85.0%
4982770 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 62.0 6.22e-01 86.3% 85.0%
5019990 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 58.0 5.42e-01 80.0% 65.3%
3989292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 4.94e-01 80.0% 53.1%
4096608 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 62.0 5.83e-01 85.0% 76.8%
4945876 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 58.0 5.14e-01 80.0% 57.3%
5079308 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 58.0 4.91e-01 80.0% 50.4%
4033964 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.32e-01 90.0% 90.6%
4986295 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.77 54.0 4.71e-01 73.8% 53.3%
3987015 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.76 55.0 5.68e-01 75.0% 82.7%
5077087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 5.95e-01 88.7% 85.3%
4319999 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.76 53.0 5.01e-01 72.5% 86.3%
5052628 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.76 56.0 4.94e-01 80.0% 53.9%
5006819 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 57.0 5.34e-01 80.0% 66.3%
3288783 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.76 54.0 5.34e-01 75.0% 72.9%
3500577 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.75 54.0 5.46e-01 75.0% 78.8%
4881905 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.75 53.0 5.48e-01 76.2% 77.6%
3519288 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.75 51.0 5.84e-01 75.0% 95.0%
5010818 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.75 60.0 5.34e-01 85.0% 63.6%
3614908 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 5.25e-01 92.5% 57.0%
4928999 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.73e-01 85.0% 75.6%
3996321 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 53.0 4.31e-01 75.0% 60.7%
4946238 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 4.34e-01 91.3% 30.4%
5079070 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.72 56.0 5.38e-01 82.5% 91.1%
3278288 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.70 52.0 5.06e-01 78.8% 70.0%
3720405 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.70 51.0 3.24e-01 77.5% 16.0%
5022685 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.70 50.0 5.65e-01 80.0% 100.0%
4649363 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.70 50.0 4.94e-01 75.0% 74.1%
4864568 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.69 50.0 4.55e-01 75.0% 83.0%
4430966 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 51.0 5.49e-01 96.2% 95.4%
4033688 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.69 49.0 5.23e-01 75.0% 85.7%
3720881 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.68 50.0 4.24e-01 78.8% 46.7%
None 0.67 48.0 4.23e-01 75.0% 73.3%
4511316 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.66 48.0 3.98e-01 76.2% 46.0%
4967677 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.65 51.0 4.81e-01 86.3% 82.8%
4629851 103.5.1.2 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.64 31.0 3.26e-01 100.0% 48.0%
1525311 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.57 49.0 4.95e-01 96.2% 97.6%
4179816 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 37.0 3.46e-01 73.8% 77.0%
4969191 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.52 36.0 3.85e-01 95.0% 90.8%
D2 high residues 107-175
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 28.4 2.10e-06 65.2% 95.7%