←Back to structures
IMGVR_UViG_3300003830_000835-3300003830-Ga0051980_1000005046
Arc-VirIMGVR_UViG_3300003830_000835-3300003830-Ga0051980_1000005046
Identity
- Kingdom:
- archaea
Quality
84.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-59
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cqxC00 | 1.20.58.890 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 62.0 | 5.40e-01 | 81.1% | 71.6% |
| 4nqwB00 | 1.10.10.1320 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain | 0.79 | 60.0 | 5.37e-01 | 81.1% | 61.6% |
| 4aybA04 | 1.10.10.1950 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 52.0 | 4.79e-01 | 96.2% | 90.5% |
| 4c0kA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.64 | 51.0 | 4.23e-01 | 90.6% | 70.3% |
| 3vkhB01 | 1.10.287.2620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 50.0 | 4.78e-01 | 88.7% | 95.3% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 45.0 | 3.81e-01 | 86.8% | 48.3% |
| 2ifcA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.59 | 46.0 | 3.10e-01 | 88.7% | 18.9% |
| 1miwA04 | 1.10.246.80 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 44.0 | 4.17e-01 | 88.7% | 84.4% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 42.0 | 3.06e-01 | 96.2% | 65.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954295 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.72 | 58.0 | 3.92e-01 | 86.8% | 57.8% |
| 3584722 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.69 | 49.0 | 4.04e-01 | 79.2% | 93.3% |
| 5062533 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 45.0 | 2.83e-01 | 73.6% | 15.7% |
| 2774099 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.65 | 51.0 | 3.40e-01 | 86.8% | 30.9% |
| 3788354 | 108.1.1.213 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2, EF-hand_7 | 0.64 | 50.0 | 4.13e-01 | 90.6% | 66.7% |
| 3636542 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.61 | 49.0 | 4.00e-01 | 100.0% | 78.3% |
| 4438075 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.61 | 52.0 | 3.32e-01 | 98.1% | 52.1% |
| 3183395 | 108.1.1.14 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2 | 0.59 | 44.0 | 3.48e-01 | 84.9% | 88.8% |
| 4508795 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.57 | 44.0 | 3.88e-01 | 86.8% | 71.2% |
D2
medium
residues 60-121
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_26136_prodigal-single.1__X__X__00026__D63-124