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IMGVR_UViG_3300003830_000835-3300003830-Ga0051980_1000005048

Arc-Vir

IMGVR_UViG_3300003830_000835-3300003830-Ga0051980_1000005048

Quality

79.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.52 40.0 2.92e-01 94.0% 38.6%
1dzfA02 3.90.940.20 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.51 33.0 3.12e-01 70.0% 74.0%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 35.0 2.64e-01 76.0% 98.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742387 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.56 41.0 2.55e-01 86.0% 72.6%
3651085 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.54 43.0 2.76e-01 100.0% 81.0%
4657312 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.52 40.0 3.31e-01 94.0% 71.8%