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IMGVR_UViG_3300003830_000835-3300003830-Ga0051980_1000005054

Arc-Vir

IMGVR_UViG_3300003830_000835-3300003830-Ga0051980_1000005054

Identity

Kingdom:
archaea

Quality

89.3 mean pLDDT

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-120
PDB
Domain cluster: rep: MN988552.1__QIG76183.1__EVC24_162__00162__D4-119
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x31B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.61 41.0 3.81e-01 95.7% 51.9%
1jyaB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 41.0 4.10e-01 87.9% 66.1%
1y56B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.59 41.0 3.75e-01 96.6% 55.0%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 36.0 4.24e-01 92.2% 94.7%
3nycA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.56 38.0 3.57e-01 94.8% 54.0%
2jfdA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.55 31.0 3.82e-01 93.1% 93.9%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.55 44.0 4.47e-01 85.3% 98.3%
2bj3D02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 35.0 4.02e-01 92.2% 91.4%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 36.0 4.16e-01 94.8% 97.6%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.52 45.0 4.26e-01 94.8% 80.7%
2d1cA02 3.30.70.1570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 4.27e-01 96.6% 92.8%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 27.0 3.00e-01 85.3% 64.0%
3hxiA01 3.30.760.10 Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e 0.51 45.0 4.02e-01 100.0% 83.0%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.50 39.0 3.87e-01 95.7% 80.2%
4wzuA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 40.0 2.92e-01 88.8% 93.3%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3798494 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.60 39.0 4.29e-01 98.3% 83.3%
5008211 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 40.0 4.19e-01 94.8% 75.2%
5041214 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.59 40.0 3.71e-01 94.8% 53.3%
4965372 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 40.0 3.85e-01 93.1% 59.3%
3914823 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 40.0 3.94e-01 94.0% 64.0%
3734464 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 41.0 3.86e-01 94.8% 57.9%
4929002 304.121.1.1 ↗ a+b two layers › Alpha-beta plaits › SP0830-like › SP0830-like › DUF1697 0.58 41.0 4.47e-01 98.3% 93.3%
4943238 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.56 39.0 3.68e-01 94.8% 58.6%
3766564 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.54 40.0 3.64e-01 94.8% 57.4%
3795718 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.54 30.0 3.36e-01 87.1% 68.9%
5025642 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 41.0 3.74e-01 96.6% 59.4%
3593385 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.53 43.0 3.50e-01 88.8% 65.3%
5082755 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 37.0 4.04e-01 96.6% 94.4%
3208942 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 36.0 3.96e-01 95.7% 92.2%
3363277 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 35.0 4.03e-01 94.8% 100.0%
4026776 317.1.1.1 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.51 45.0 3.94e-01 98.3% 79.4%
5081564 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 44.0 3.11e-01 99.1% 71.4%
1870448 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.51 40.0 4.12e-01 95.7% 90.1%
3799104 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.50 41.0 3.61e-01 99.1% 58.9%
4965145 244.1.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.50 36.0 3.87e-01 97.4% 89.0%