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IMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007410
Arc-VirIMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007410
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-51
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bduA02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.73 | 52.0 | 4.53e-01 | 76.6% | 50.0% |
| 4nv0A02 | 1.10.150.340 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain | 0.70 | 49.0 | 4.17e-01 | 76.6% | 45.1% |
| 3urgA01 | 6.10.140.400 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 58.0 | 5.38e-01 | 100.0% | 83.3% |
| 2kj9A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.67 | 57.0 | 4.33e-01 | 100.0% | 47.5% |
| 4eqyA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.67 | 57.0 | 5.11e-01 | 100.0% | 75.7% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.66 | 47.0 | 3.36e-01 | 76.6% | 24.0% |
| 3o4zA02 | 1.25.40.720 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain | 0.66 | 54.0 | 3.68e-01 | 100.0% | 29.9% |
| 2vsoF01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.65 | 54.0 | 3.51e-01 | 97.9% | 26.4% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.65 | 53.0 | 3.18e-01 | 100.0% | 22.9% |
| 6n2nA01 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.63 | 52.0 | 3.65e-01 | 100.0% | 90.4% |
| 5u56A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 50.0 | 4.03e-01 | 100.0% | 66.1% |
| 1s5jA04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.62 | 42.0 | 3.92e-01 | 72.3% | 90.2% |
| 5aj3N01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 3.68e-01 | 89.4% | 41.8% |
| 2oy9A01 | 1.10.220.80 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › BH2638-like | 0.60 | 51.0 | 4.43e-01 | 97.9% | 77.6% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 44.0 | 4.07e-01 | 76.6% | 63.9% |
| 1j2zA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.60 | 50.0 | 4.55e-01 | 100.0% | 73.1% |
| 2r7hB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 51.0 | 3.59e-01 | 100.0% | 66.7% |
| 3l6xA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.59 | 47.0 | 2.84e-01 | 100.0% | 11.1% |
| 1lfkA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 48.0 | 2.93e-01 | 100.0% | 32.8% |
| 1g5bB00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.58 | 51.0 | 3.29e-01 | 100.0% | 43.9% |
| 2losA00 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.58 | 39.0 | 3.08e-01 | 72.3% | 30.4% |
| 1c4kA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 41.0 | 2.53e-01 | 83.0% | 11.8% |
| 1xb4B01 | 1.10.10.570 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" | 0.57 | 49.0 | 3.83e-01 | 97.9% | 64.4% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 42.0 | 3.94e-01 | 76.6% | 63.8% |
| 1sezA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 47.0 | 3.23e-01 | 100.0% | 25.0% |
| 1bccA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 42.0 | 2.92e-01 | 100.0% | 69.1% |
| 1z9eA00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.50 | 39.0 | 3.45e-01 | 100.0% | 66.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4177727 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.90 | 81.0 | 6.00e-01 | 100.0% | 41.8% |
| 4641265 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.90 | 80.0 | 6.05e-01 | 100.0% | 43.8% |
| 5031569 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.90 | 81.0 | 5.90e-01 | 97.9% | 41.7% |
| 4957964 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.87 | 78.0 | 5.77e-01 | 100.0% | 42.6% |
| 4954945 | 4095.1.1.1 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N | 0.85 | 75.0 | 5.98e-01 | 100.0% | 51.1% |
| 3613428 | 376.1.1.67 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3H2C3 | 0.85 | 58.0 | 4.63e-01 | 80.9% | 37.8% |
| 3218479 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.83 | 64.0 | 4.30e-01 | 83.0% | 24.5% |
| 3627611 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.79 | 61.0 | 3.89e-01 | 83.0% | 19.0% |
| 3229627 | 632.2.1.21 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › ANIS5_cation-bd | 0.74 | 61.0 | 6.00e-01 | 95.7% | 86.0% |
| 4927874 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.72 | 61.0 | 4.65e-01 | 95.7% | 49.1% |
| 3192270 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 58.0 | 3.69e-01 | 100.0% | 26.9% |
| 5000873 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.68 | 56.0 | 4.70e-01 | 100.0% | 55.6% |
| None | — | 0.67 | 56.0 | 3.51e-01 | 100.0% | 17.9% | |
| 3683792 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 55.0 | 4.35e-01 | 100.0% | 41.8% |
| None | — | 0.66 | 54.0 | 3.48e-01 | 100.0% | 18.9% | |
| 4955748 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.66 | 57.0 | 4.64e-01 | 97.9% | 73.3% |
| 4864563 | 592.6.1.1 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug | 0.66 | 54.0 | 4.59e-01 | 100.0% | 55.8% |
| 1175589 | 101.1.2.113 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNase_H2-Ydr279 | 0.65 | 51.0 | 3.86e-01 | 89.4% | 92.6% |
| 5074225 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.65 | 53.0 | 4.47e-01 | 100.0% | 85.6% |
| 3518386 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.64 | 45.0 | 3.95e-01 | 83.0% | 48.0% |
| 4300897 | 5094.1.1.1 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH | 0.64 | 45.0 | 3.40e-01 | 76.6% | 28.5% |
| 4027037 | 5001.1.1.8 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HlyIII | 0.61 | 48.0 | 3.09e-01 | 89.4% | 39.2% |
| 4965149 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.61 | 42.0 | 4.21e-01 | 76.6% | 74.0% |
| 3928661 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.58 | 45.0 | 3.37e-01 | 83.0% | 67.0% |
| 2859501 | 601.55.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 | 0.55 | 46.0 | 3.32e-01 | 100.0% | 94.7% |
| 3708446 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.55 | 42.0 | 3.76e-01 | 100.0% | 70.6% |
D2
high
residues 64-202
Domain cluster:
rep: NUDIX_hydrolase__YP_007354117__Acanthamoeba_polyphaga_moumouvirus__1269028__D1-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00293.35 best | NUDIX | 39.6 | 7.00e-10 | 96.4% | 35.8% |