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IMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007421
Arc-VirIMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007421
Identity
- Kingdom:
- archaea
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cl8A00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.59 | 41.0 | 2.68e-01 | 76.0% | 39.8% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 43.0 | 3.80e-01 | 84.0% | 98.8% |
| 4qmfB01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.58 | 44.0 | 3.91e-01 | 88.0% | 54.9% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.83e-01 | 92.0% | 59.3% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 41.0 | 3.63e-01 | 88.0% | 56.5% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.55 | 41.0 | 3.70e-01 | 88.0% | 64.9% |
| 6lw5A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 44.0 | 2.81e-01 | 100.0% | 71.2% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.54 | 39.0 | 3.25e-01 | 82.0% | 80.2% |
| 5a48B00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.53 | 36.0 | 3.04e-01 | 70.0% | 82.3% |
| 2kyyA00 | 3.30.950.30 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain | 0.52 | 37.0 | 2.82e-01 | 86.0% | 67.3% |
| 1tuaA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 39.0 | 3.44e-01 | 88.0% | 53.6% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 38.0 | 3.22e-01 | 88.0% | 47.4% |
| 6liuC02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.04e-01 | 88.0% | 48.3% |
| 2gjwC01 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 40.0 | 2.92e-01 | 88.0% | 47.9% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.50 | 34.0 | 2.90e-01 | 72.0% | 43.2% |
| 3pieA02 | 3.30.1370.250 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.50 | 38.0 | 3.18e-01 | 88.0% | 94.0% |
| 1u0tB01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.50 | 40.0 | 2.93e-01 | 88.0% | 70.5% |
| 6p2uA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.50 | 35.0 | 3.50e-01 | 86.0% | 73.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000395 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.60 | 46.0 | 3.93e-01 | 92.0% | 93.5% |
| 3714022 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.60 | 47.0 | 4.50e-01 | 90.0% | 90.0% |
| 4028109 | 3525.1.1.0 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain | 0.59 | 43.0 | 3.99e-01 | 78.0% | 64.6% |
| 5036602 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.58 | 44.0 | 3.71e-01 | 84.0% | 52.9% |
| 3411631 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.58 | 46.0 | 3.96e-01 | 96.0% | 71.1% |
| 3708219 | 331.23.1.4 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C | 0.57 | 42.0 | 3.86e-01 | 82.0% | 81.4% |
| 3927639 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 38.0 | 2.32e-01 | 70.0% | 24.9% |
| 3399732 | 3016.1.1.22 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen2 | 0.56 | 40.0 | 3.23e-01 | 78.0% | 89.5% |
| 5067176 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.56 | 45.0 | 3.07e-01 | 94.0% | 30.5% |
| 3612108 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.56 | 41.0 | 3.72e-01 | 86.0% | 57.1% |
| 3931636 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.56 | 42.0 | 4.01e-01 | 84.0% | 83.3% |
| 5056954 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.55 | 40.0 | 3.62e-01 | 82.0% | 61.3% |
| 3417192 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.55 | 41.0 | 4.18e-01 | 88.0% | 100.0% |
| 3877696 | 101.1.2.164 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 | 0.54 | 38.0 | 3.11e-01 | 76.0% | 46.0% |
| 3179049 | 304.20.1.2 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D3 | 0.54 | 41.0 | 3.04e-01 | 96.0% | 84.6% |
| 3261151 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.53 | 43.0 | 2.77e-01 | 100.0% | 27.5% |
| 3947139 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.53 | 45.0 | 2.80e-01 | 100.0% | 40.9% |
| 3520913 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.53 | 40.0 | 2.32e-01 | 88.0% | 8.9% |
| 3335794 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 41.0 | 2.84e-01 | 100.0% | 61.7% |
| 3726966 | 305.2.1.1 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin_4a | 0.53 | 39.0 | 2.79e-01 | 88.0% | 36.3% |
| 4943824 | 205.1.1.119 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Nitroreductase | 0.52 | 39.0 | 3.59e-01 | 86.0% | 68.6% |
| 3242475 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.52 | 35.0 | 3.05e-01 | 72.0% | 44.4% |
| 3584644 | 304.9.1.59 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › CEBP_ZZ | 0.52 | 36.0 | 2.92e-01 | 76.0% | 48.2% |
| 4030181 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.52 | 35.0 | 2.45e-01 | 70.0% | 44.1% |
| 5073006 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 35.0 | 2.53e-01 | 72.0% | 68.1% |
| 4998306 | 205.1.1.0 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin | 0.52 | 34.0 | 3.48e-01 | 70.0% | 75.6% |
| 3735991 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.51 | 41.0 | 2.39e-01 | 100.0% | 22.3% |
| 3530175 | 2485.1.1.40 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 | 0.51 | 34.0 | 2.80e-01 | 72.0% | 93.3% |
| 5078260 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.51 | 40.0 | 2.71e-01 | 100.0% | 80.0% |
| 3177693 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 40.0 | 2.50e-01 | 100.0% | 40.0% |
| 3176450 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.50 | 36.0 | 2.99e-01 | 82.0% | 61.5% |
| 3390936 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.50 | 37.0 | 3.10e-01 | 100.0% | 43.0% |