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IMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007438
Arc-VirIMGVR_UViG_3300003830_000837-3300003830-Ga0051980_1000007438
Identity
- Kingdom:
- archaea
Quality
89.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-40_139-163
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 35.0 | 3.35e-01 | 100.0% | 38.7% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.65 | 53.0 | 4.80e-01 | 90.8% | 78.7% |
| 3a1sA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 50.0 | 4.59e-01 | 87.7% | 80.7% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.63 | 52.0 | 4.60e-01 | 92.3% | 90.7% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 48.0 | 4.50e-01 | 84.6% | 69.2% |
| 1sfuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.54e-01 | 86.2% | 77.1% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 48.0 | 3.44e-01 | 87.7% | 33.7% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.57 | 41.0 | 3.48e-01 | 78.5% | 77.0% |
| 4p02B05 | 1.20.5.4520 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 37.0 | 3.28e-01 | 70.8% | 52.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4235730 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.69 | 53.0 | 5.53e-01 | 83.1% | 96.7% |
| 3184140 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.63 | 43.0 | 3.51e-01 | 70.8% | 54.8% |
| 3897765 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.62 | 52.0 | 4.00e-01 | 90.8% | 82.1% |
| 3735853 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.61 | 50.0 | 5.19e-01 | 92.3% | 100.0% |
| 3787585 | 5086.1.1.87 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING | 0.61 | 42.0 | 3.54e-01 | 70.8% | 46.7% |
| 3479895 | 4015.1.1.0 ↗ | alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins | 0.59 | 49.0 | 3.43e-01 | 93.8% | 39.1% |
| 3440543 | 207.1.1.96 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 | 0.56 | 38.0 | 2.28e-01 | 73.8% | 9.7% |
| 3244780 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.54 | 44.0 | 2.64e-01 | 89.2% | 66.8% |
D2
medium
residues 41-138
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.62 | 36.0 | 3.86e-01 | 87.8% | 65.1% |
| 7pwfD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.58 | 35.0 | 3.73e-01 | 78.6% | 66.3% |
| 2joqA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 33.0 | 3.60e-01 | 100.0% | 68.0% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.56 | 41.0 | 3.74e-01 | 93.9% | 56.4% |
| 4bfiB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 30.0 | 3.16e-01 | 93.9% | 53.3% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 35.0 | 3.38e-01 | 95.9% | 54.1% |
| 2abyA00 | 3.30.70.1980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF09406, DUF2004 | 0.56 | 32.0 | 3.01e-01 | 86.7% | 44.3% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.55 | 38.0 | 3.83e-01 | 95.9% | 70.0% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.54 | 35.0 | 3.46e-01 | 94.9% | 59.3% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 31.0 | 3.19e-01 | 80.6% | 59.8% |
| 1o51A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.39e-01 | 87.8% | 65.2% |
| 1tz0B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.20e-01 | 87.8% | 60.8% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.52 | 31.0 | 3.19e-01 | 100.0% | 62.2% |
| 2k3iA01 | 3.30.70.860 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 32.0 | 3.36e-01 | 87.8% | 70.6% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 36.0 | 2.77e-01 | 72.4% | 61.8% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 39.0 | 3.58e-01 | 100.0% | 63.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4980535 | 101.1.2.914 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6015 | 0.66 | 39.0 | 3.99e-01 | 89.8% | 61.1% |
| 3924304 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.58 | 30.0 | 3.68e-01 | 83.7% | 76.9% |
| 3917081 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 33.0 | 3.35e-01 | 87.8% | 54.0% |
| 3163632 | 3313.1.1.1 ↗ | a+b two layers › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › Uncharacterized protein VC_A0919 › DUF406 | 0.58 | 33.0 | 3.62e-01 | 95.9% | 67.5% |
| 4205746 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.57 | 37.0 | 3.66e-01 | 100.0% | 61.0% |
| 2846995 | 304.12.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 | 0.56 | 36.0 | 3.71e-01 | 88.8% | 67.7% |
| 5000753 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.56 | 45.0 | 4.09e-01 | 94.9% | 65.4% |
| 4935371 | 327.11.2.87 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › FLAD1_M | 0.56 | 29.0 | 3.41e-01 | 83.7% | 71.4% |
| 4981191 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.54 | 27.0 | 3.13e-01 | 80.6% | 64.3% |
| 3487954 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 31.0 | 3.40e-01 | 83.7% | 68.2% |
| 4120056 | 230.2.1.2 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 | 0.54 | 39.0 | 3.68e-01 | 83.7% | 63.0% |
| 3686581 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.53 | 29.0 | 3.27e-01 | 87.8% | 69.3% |
| 5029644 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.52 | 33.0 | 3.24e-01 | 100.0% | 57.1% |
| 4062392 | 304.5.1.7 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 | 0.52 | 27.0 | 2.78e-01 | 100.0% | 47.0% |
| 3499772 | 327.11.2.20 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH | 0.52 | 31.0 | 3.28e-01 | 83.7% | 65.6% |
| 3477897 | 304.44.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 | 0.52 | 30.0 | 3.16e-01 | 100.0% | 58.9% |
| 2777205 | 304.159.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C | 0.52 | 31.0 | 3.17e-01 | 84.7% | 61.3% |
| 3279118 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.51 | 31.0 | 2.95e-01 | 100.0% | 50.4% |
| 4944179 | 304.43.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein TT1725 › Hypothetical protein TT1725 | 0.51 | 32.0 | 3.26e-01 | 100.0% | 63.0% |
| 4553370 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.50 | 39.0 | 3.71e-01 | 100.0% | 69.6% |