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IMGVR_UViG_3300004109_000154-3300004109-Ga0008650_100095610

Arc-Vir

IMGVR_UViG_3300004109_000154-3300004109-Ga0008650_100095610

Identity

Kingdom:
archaea

Quality

94.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 54-359
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k92A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.76 40.0 5.52e-01 85.0% 97.5%
3n05A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.74 44.0 5.67e-01 83.0% 96.3%
1surA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.73 45.0 5.37e-01 71.2% 86.5%
2c5sA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.73 43.0 5.29e-01 91.2% 88.2%
2goyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.73 50.0 5.80e-01 90.8% 94.6%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.72 42.0 5.47e-01 81.0% 100.0%
2yk4A01 3.30.370.20 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › 0.71 21.0 4.27e-01 87.3% 100.0%
2vxoA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 48.0 5.66e-01 73.5% 95.9%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.69 31.0 4.76e-01 79.1% 99.2%
3vrhA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 51.0 5.20e-01 95.1% 78.9%
2oq2D00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 48.0 5.32e-01 95.4% 89.0%
1xngA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.67 51.0 5.72e-01 97.7% 96.8%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 51.0 5.54e-01 98.0% 93.4%
3k32B00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.66 40.0 4.92e-01 86.6% 92.9%
1kqpA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.65 51.0 5.43e-01 98.0% 90.0%
2derB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 43.0 5.19e-01 85.3% 100.0%
2pg3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 42.0 4.91e-01 77.8% 93.2%
6tm3A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 29.0 4.00e-01 98.7% 90.7%
1m1zA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 46.0 4.84e-01 96.1% 88.8%
1q15D02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 44.0 4.68e-01 95.8% 87.3%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.55 31.0 3.54e-01 83.0% 70.8%
3tpfA02 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.55 29.0 3.85e-01 98.7% 93.2%
3ilvA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 49.0 4.81e-01 96.4% 86.5%
2wsiA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.55 44.0 4.59e-01 86.3% 87.7%
2acvA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.55 36.0 3.79e-01 89.2% 71.7%
8g7wA04 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 36.0 4.04e-01 75.5% 83.6%
1ct9B02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 46.0 4.71e-01 95.8% 92.0%
1qydA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 32.0 4.01e-01 97.4% 95.8%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 27.0 3.72e-01 75.8% 98.6%
3k5wA01 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.52 31.0 3.69e-01 83.0% 84.5%
3i6iA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 30.0 3.85e-01 95.1% 95.7%
1y1pA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 40.0 3.98e-01 81.0% 88.4%
4fn4A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 39.0 4.29e-01 97.1% 95.7%
4zn0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 24.0 3.33e-01 74.8% 87.5%
ECOD (98)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3973558 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.97 95.0 8.76e-01 100.0% 87.3%
5080574 2005.1.1.108 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30497 0.96 88.0 8.34e-01 93.5% 86.9%
5004524 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.85 73.0 7.34e-01 88.6% 97.7%
3603384 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.84 62.0 7.00e-01 88.2% 95.4%
5004079 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.83 76.0 7.39e-01 94.1% 87.8%
5021367 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.82 72.0 7.38e-01 89.9% 99.3%
1309317 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.82 35.0 5.40e-01 80.1% 93.3%
4952835 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.81 44.0 5.91e-01 70.6% 95.3%
5049776 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.81 68.0 7.04e-01 85.6% 93.0%
5033584 2005.1.1.108 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30497 0.80 71.0 6.75e-01 91.5% 83.1%
5029545 2005.1.1.108 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PF30497 0.80 71.0 7.02e-01 91.5% 88.7%
5012450 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.80 59.0 6.71e-01 90.2% 97.0%
5042069 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.80 62.0 6.89e-01 90.2% 97.2%
3604348 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.80 44.0 5.87e-01 88.2% 95.4%
4950959 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.79 47.0 6.16e-01 74.8% 100.0%
5023424 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.79 56.0 6.52e-01 88.2% 98.2%
4971349 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.79 64.0 6.80e-01 86.9% 93.3%
4940246 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.78 43.0 5.70e-01 70.9% 94.3%
4989452 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.78 43.0 5.79e-01 86.6% 97.6%
5022267 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.77 60.0 6.59e-01 89.5% 96.8%
5014269 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.76 50.0 5.03e-01 89.9% 64.8%
4945173 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.75 44.0 5.63e-01 91.2% 95.1%
4943110 2005.1.1.111 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › GMP_synt_C 0.75 47.0 5.82e-01 71.2% 95.5%
4930540 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.75 47.0 5.63e-01 91.8% 89.3%
4999088 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.75 46.0 5.76e-01 87.3% 95.9%
5062204 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.74 48.0 5.70e-01 91.8% 91.2%
5014627 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.73 48.0 5.83e-01 85.6% 96.7%
4487256 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.73 48.0 5.67e-01 81.7% 93.0%
5022266 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.72 45.0 5.75e-01 72.2% 100.0%
4005131 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.72 48.0 5.44e-01 91.8% 85.8%
5077882 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.71 47.0 5.51e-01 87.6% 90.7%
133894 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.71 52.0 5.91e-01 98.0% 96.2%
4952441 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.71 56.0 6.09e-01 86.3% 95.0%
3602090 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.70 48.0 5.64e-01 73.9% 94.2%
4163031 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.70 49.0 5.65e-01 96.4% 95.1%
4045263 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.69 53.0 5.85e-01 99.0% 95.6%
5082742 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.69 52.0 5.56e-01 91.8% 87.4%
5015866 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.69 47.0 5.54e-01 72.5% 94.7%
4513465 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.69 49.0 5.59e-01 96.4% 95.2%
5053982 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.68 53.0 5.61e-01 97.4% 88.9%
5015379 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.68 54.0 5.86e-01 86.3% 95.0%
5026578 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.68 55.0 6.02e-01 85.9% 99.6%
4052133 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.68 49.0 5.51e-01 96.1% 92.5%
4664976 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 52.0 5.80e-01 97.7% 97.6%
5044019 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 54.0 5.91e-01 85.6% 97.6%
5048259 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.68 53.0 5.82e-01 85.0% 96.5%
5074926 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.67 46.0 5.45e-01 91.5% 97.7%
4536847 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.67 47.0 5.53e-01 90.2% 100.0%
4263013 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.66 54.0 5.71e-01 100.0% 93.7%
None — 0.66 49.0 5.58e-01 99.3% 98.7%
3339632 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.66 50.0 5.48e-01 96.7% 93.2%
None — 0.66 51.0 5.55e-01 98.0% 93.7%
4262903 2005.1.1.23 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA_Me_trans 0.66 46.0 5.44e-01 86.6% 98.6%
4072992 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.66 53.0 5.64e-01 100.0% 92.7%
5051458 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 47.0 5.52e-01 72.5% 100.0%
4941917 2005.1.1.70 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF7411 0.65 42.0 5.08e-01 82.7% 96.5%
5039281 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.64 43.0 5.17e-01 77.1% 98.5%
4601377 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.64 45.0 5.18e-01 78.8% 95.6%
None — 0.63 43.0 5.08e-01 78.8% 96.7%
None — 0.63 43.0 5.15e-01 78.4% 100.0%
4308342 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.63 43.0 5.10e-01 79.4% 99.0%
None — 0.62 43.0 4.95e-01 78.8% 93.0%
None — 0.62 43.0 4.94e-01 78.8% 93.5%
4538553 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.61 42.0 5.00e-01 78.4% 99.1%
None — 0.61 42.0 4.93e-01 77.8% 96.8%
4241012 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.61 43.0 4.94e-01 77.5% 96.0%
None — 0.61 43.0 4.97e-01 78.4% 97.3%
None — 0.61 42.0 4.94e-01 75.8% 98.6%
4125125 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.60 41.0 4.96e-01 75.5% 100.0%
4338016 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.60 44.0 5.08e-01 82.4% 99.6%
None — 0.60 43.0 4.99e-01 81.7% 99.6%
None — 0.59 44.0 4.90e-01 81.7% 95.8%
None — 0.59 43.0 4.90e-01 84.3% 100.0%
3281499 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.59 42.0 4.88e-01 82.0% 100.0%
None — 0.58 42.0 4.83e-01 79.7% 100.0%
4075676 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.58 45.0 4.96e-01 86.3% 96.9%
4976396 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.58 43.0 4.78e-01 78.1% 93.6%
None — 0.58 44.0 4.94e-01 81.0% 98.7%
4127143 2005.1.1.27 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC 0.58 44.0 4.94e-01 81.0% 98.7%
5081219 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.58 42.0 4.72e-01 87.9% 93.1%
5044033 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.58 48.0 4.99e-01 93.8% 92.6%
5032273 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.57 48.0 4.99e-01 93.8% 93.9%
None — 0.57 45.0 4.96e-01 85.6% 100.0%
4262428 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.57 53.0 5.33e-01 97.4% 96.5%
9840 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.57 45.0 4.70e-01 95.4% 87.5%
5044108 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.57 47.0 4.99e-01 93.5% 96.4%
3788813 2003.1.7.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.56 33.0 4.01e-01 96.4% 84.9%
5024222 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.55 47.0 4.71e-01 94.4% 85.3%
4968614 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.55 42.0 4.66e-01 89.2% 97.6%
3167045 2003.1.7.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › IF-2B 0.55 33.0 3.82e-01 96.4% 80.9%
4932416 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.55 44.0 4.70e-01 94.1% 93.5%
4999801 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.54 46.0 4.83e-01 95.4% 95.7%
4980138 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.54 47.0 4.86e-01 93.8% 95.8%
3287133 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.53 48.0 4.35e-01 95.8% 94.7%
3960595 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.52 47.0 4.41e-01 94.8% 96.4%
3956153 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.52 47.0 4.51e-01 94.8% 91.8%
4214089 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.52 46.0 4.31e-01 94.8% 87.4%
5016070 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.50 45.0 4.29e-01 94.8% 93.5%