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IMGVR_UViG_3300004109_000154-3300004109-Ga0008650_100095623
Arc-VirIMGVR_UViG_3300004109_000154-3300004109-Ga0008650_100095623
Identity
- Kingdom:
- archaea
Quality
67.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-34
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q0oC00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.79 | 53.0 | 3.93e-01 | 70.6% | 30.2% |
| 5hayA02 | 1.25.40.440 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain | 0.77 | 51.0 | 3.88e-01 | 82.4% | 29.1% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.76 | 58.0 | 4.70e-01 | 94.1% | 48.6% |
| 4aefA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.75 | 52.0 | 2.94e-01 | 73.5% | 8.0% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.74 | 59.0 | 4.63e-01 | 100.0% | 41.7% |
| 1v66A00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.73 | 58.0 | 4.76e-01 | 91.2% | 100.0% |
| 1o5wA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.72 | 58.0 | 3.65e-01 | 100.0% | 16.8% |
| 4q6lA00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.69 | 51.0 | 3.43e-01 | 82.4% | 21.5% |
| 5uayA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.65 | 46.0 | 3.58e-01 | 76.5% | 62.7% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.65 | 51.0 | 3.87e-01 | 91.2% | 36.0% |
| 2dk4A00 | 4.10.280.110 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain | 0.65 | 52.0 | 4.29e-01 | 100.0% | 56.6% |
| 1r4vA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.64 | 53.0 | 3.51e-01 | 100.0% | 84.1% |
| 2ja2A02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.62 | 43.0 | 3.00e-01 | 73.5% | 56.7% |
| 4k17B03 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.62 | 49.0 | 2.71e-01 | 91.2% | 16.2% |
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.59 | 44.0 | 3.80e-01 | 88.2% | 56.7% |
| 2wqgA00 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.59 | 45.0 | 4.20e-01 | 100.0% | 66.7% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.58 | 45.0 | 3.06e-01 | 91.2% | 24.8% |
| 2pn5A09 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 43.0 | 2.57e-01 | 88.2% | 10.3% |
| 8e7cA02 | 1.10.1840.10 | Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 | 0.56 | 43.0 | 3.28e-01 | 91.2% | 76.5% |
| 3brcA02 | 3.40.50.10150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit | 0.55 | 45.0 | 3.21e-01 | 100.0% | 90.8% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.53 | 42.0 | 3.83e-01 | 91.2% | 62.5% |
| 2o5rA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.50 | 35.0 | 3.34e-01 | 85.3% | 97.9% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3880432 | 603.1.1.163 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27977 | 0.91 | 79.0 | 5.73e-01 | 100.0% | 38.9% |
| None | — | 0.82 | 67.0 | 4.14e-01 | 100.0% | 16.1% | |
| 3563206 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.81 | 58.0 | 5.59e-01 | 79.4% | 77.5% |
| 3171091 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.80 | 60.0 | 5.78e-01 | 85.3% | 82.5% |
| 3489475 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.80 | 62.0 | 5.34e-01 | 94.1% | 60.0% |
| 3734131 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.79 | 63.0 | 5.31e-01 | 100.0% | 58.5% |
| 3197455 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.78 | 63.0 | 5.19e-01 | 100.0% | 57.1% |
| 3567229 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.78 | 55.0 | 5.48e-01 | 76.5% | 85.7% |
| 3241469 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.78 | 61.0 | 5.51e-01 | 100.0% | 69.1% |
| 4969190 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.78 | 56.0 | 5.46e-01 | 82.4% | 80.0% |
| 3264037 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.77 | 56.0 | 5.22e-01 | 82.4% | 71.1% |
| 3552760 | 130.1.1.6 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 | 0.77 | 57.0 | 5.55e-01 | 88.2% | 92.5% |
| 3207125 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.77 | 54.0 | 5.42e-01 | 79.4% | 88.6% |
| 3199629 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.76 | 56.0 | 5.09e-01 | 85.3% | 66.0% |
| None | — | 0.76 | 60.0 | 3.77e-01 | 100.0% | 19.5% | |
| 3169829 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.76 | 56.0 | 5.66e-01 | 85.3% | 94.3% |
| 3925923 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.76 | 57.0 | 4.73e-01 | 91.2% | 54.3% |
| 3612725 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.76 | 58.0 | 4.33e-01 | 82.4% | 34.1% |
| 3191289 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.75 | 55.0 | 5.07e-01 | 88.2% | 68.0% |
| 3274349 | 130.1.1.6 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 | 0.75 | 53.0 | 5.39e-01 | 79.4% | 100.0% |
| 4189928 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.75 | 59.0 | 4.89e-01 | 100.0% | 61.4% |
| 3478930 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.74 | 51.0 | 4.99e-01 | 76.5% | 75.0% |
| 3264035 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.74 | 53.0 | 5.21e-01 | 85.3% | 85.0% |
| 3893471 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.74 | 55.0 | 4.78e-01 | 91.2% | 60.0% |
| 3668249 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.74 | 52.0 | 4.89e-01 | 79.4% | 68.9% |
| 4121822 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.73 | 59.0 | 5.34e-01 | 97.1% | 70.0% |
| 3399672 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.73 | 58.0 | 4.81e-01 | 94.1% | 50.8% |
| 3177778 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.72 | 53.0 | 5.11e-01 | 91.2% | 77.8% |
| 3257421 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.72 | 55.0 | 4.58e-01 | 97.1% | 54.3% |
| 3682977 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.72 | 58.0 | 4.68e-01 | 97.1% | 46.7% |
| 3681879 | 67.1.1.5 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ | 0.71 | 55.0 | 4.09e-01 | 91.2% | 31.6% |
| 3934734 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.71 | 51.0 | 4.82e-01 | 82.4% | 73.3% |
| 3499508 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.71 | 54.0 | 5.12e-01 | 88.2% | 76.7% |
| 3386136 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.70 | 58.0 | 4.62e-01 | 97.1% | 49.3% |
| 4264100 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.70 | 48.0 | 3.45e-01 | 70.6% | 30.5% |
| 4033136 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.70 | 52.0 | 4.66e-01 | 91.2% | 63.6% |
| 3881311 | 130.1.1.32 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) | 0.69 | 50.0 | 4.73e-01 | 85.3% | 75.6% |
| 3705227 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.69 | 51.0 | 4.09e-01 | 91.2% | 42.5% |
| 4087978 | 4993.1.1.0 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit | 0.68 | 52.0 | 3.80e-01 | 88.2% | 34.0% |
| 4009690 | 7523.1.1.25 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Phosphonate-bd | 0.68 | 48.0 | 3.04e-01 | 76.5% | 27.2% |
| 4660205 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.68 | 56.0 | 3.80e-01 | 97.1% | 83.7% |
| 3444835 | 5050.1.1.70 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › EMP70 | 0.68 | 49.0 | 2.84e-01 | 79.4% | 8.9% |
| 3432916 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.67 | 50.0 | 4.31e-01 | 91.2% | 50.9% |
| 4584784 | 4993.1.1.3 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatF | 0.67 | 53.0 | 3.64e-01 | 91.2% | 26.2% |
| 3699724 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.67 | 55.0 | 4.40e-01 | 94.1% | 50.0% |
| 3129 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.66 | 52.0 | 5.17e-01 | 97.1% | 94.4% |
| 3630915 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.66 | 53.0 | 3.36e-01 | 100.0% | 16.7% |
| 4375209 | 4993.1.1.3 ↗ | extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatF | 0.65 | 49.0 | 3.43e-01 | 85.3% | 26.4% |
| 3579277 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.64 | 55.0 | 4.71e-01 | 100.0% | 61.8% |
| 3571045 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 48.0 | 4.69e-01 | 100.0% | 79.1% |
| 4971999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 50.0 | 3.45e-01 | 91.2% | 28.0% |
| 3242754 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.62 | 53.0 | 4.88e-01 | 100.0% | 75.6% |
| 4547675 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.62 | 52.0 | 5.02e-01 | 100.0% | 87.5% |
| 3180105 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.61 | 50.0 | 4.84e-01 | 100.0% | 87.5% |
| 3397373 | 130.1.1.6 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 | 0.61 | 54.0 | 4.32e-01 | 100.0% | 53.8% |
| 164080 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.61 | 49.0 | 4.32e-01 | 100.0% | 60.3% |
| 3457908 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.61 | 50.0 | 4.68e-01 | 100.0% | 75.6% |
| 3733150 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.61 | 46.0 | 2.99e-01 | 88.2% | 15.4% |
| 3930571 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.60 | 42.0 | 3.81e-01 | 100.0% | 50.0% |
| 3698371 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.60 | 47.0 | 4.37e-01 | 97.1% | 66.0% |
| 3698465 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.58 | 46.0 | 4.19e-01 | 94.1% | 64.0% |
| 3613498 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.56 | 48.0 | 2.91e-01 | 100.0% | 73.9% |