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IMGVR_UViG_3300004210_000404-3300004210-Ga0066639_100248547

Arc-Vir

IMGVR_UViG_3300004210_000404-3300004210-Ga0066639_100248547

Identity

Kingdom:
archaea

Quality

95.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-45
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 53.0 4.09e-01 79.5% 45.8%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.61 41.0 3.54e-01 72.7% 83.7%
1umhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 51.0 3.50e-01 100.0% 90.8%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 51.0 4.05e-01 100.0% 51.6%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 45.0 2.69e-01 86.4% 93.2%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.83e-01 100.0% 87.3%
3uhjC01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 42.0 3.04e-01 84.1% 50.7%
1ta9B01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 42.0 3.04e-01 84.1% 52.0%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 2.68e-01 70.5% 54.8%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.64e-01 100.0% 46.9%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 41.0 2.90e-01 90.9% 75.6%
5wq5A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 2.89e-01 86.4% 49.1%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.23e-01 100.0% 38.4%
6a48A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 3.11e-01 100.0% 34.2%
6fzvD01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.53 44.0 3.37e-01 100.0% 81.4%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.17e-01 100.0% 36.0%
1wljA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 39.0 2.71e-01 84.1% 52.4%
5fl4A00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.52 39.0 2.63e-01 100.0% 52.2%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.35e-01 100.0% 54.9%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 2.75e-01 79.5% 59.7%
2qqkA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.51 39.0 3.12e-01 100.0% 81.2%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 43.0 3.32e-01 100.0% 42.1%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 38.0 2.89e-01 95.5% 31.5%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.50 38.0 3.21e-01 100.0% 46.5%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992606 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.66 40.0 2.47e-01 75.0% 11.1%
3442291 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.63 51.0 2.94e-01 90.9% 31.3%
3794360 11.1.1.391 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD,MG3 0.62 48.0 2.65e-01 100.0% 4.9%
3736412 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 47.0 2.89e-01 90.9% 65.6%
5033248 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 50.0 3.77e-01 100.0% 94.4%
4940711 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.61 39.0 2.40e-01 75.0% 10.7%
4027423 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 46.0 2.77e-01 84.1% 58.2%
3706976 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 48.0 3.03e-01 90.9% 62.9%
5035449 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.60 39.0 2.39e-01 72.7% 9.8%
3804197 207.1.1.238 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_3, LRR_13 0.60 49.0 2.81e-01 100.0% 9.6%
4933948 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.60 47.0 4.07e-01 100.0% 52.9%
5067639 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 50.0 3.73e-01 100.0% 78.4%
4956009 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.03e-01 100.0% 54.1%
4928924 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 3.26e-01 81.8% 86.7%
4969611 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 43.0 2.84e-01 100.0% 15.6%
None — 0.58 43.0 2.95e-01 86.4% 30.6%
3222259 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.60e-01 84.1% 40.5%
4585119 1074.1.1.4 ↗ alpha arrays › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Alpha helical domain of ribonucleotide reductases › Ribonuc_red_2_N 0.57 40.0 2.89e-01 75.0% 25.9%
1237900 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.57 42.0 2.98e-01 84.1% 47.9%
3732582 298.1.1.22 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Gal80p_C-like 0.57 45.0 2.85e-01 90.9% 72.4%
3739298 59.1.3.1 ↗ beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.57 44.0 3.41e-01 88.6% 74.3%
3385762 4951.1.1.0 ↗ alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit 0.56 44.0 3.83e-01 97.7% 97.5%
3962443 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 42.0 2.90e-01 81.8% 63.1%
4947719 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 46.0 3.22e-01 100.0% 32.7%
5055290 244.4.1.4 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 0.56 39.0 3.35e-01 72.7% 48.5%
3386888 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.56 38.0 3.00e-01 72.7% 32.4%
4466626 10.32.1.244 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 0.56 44.0 3.52e-01 100.0% 40.0%
3587924 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.56 41.0 2.97e-01 84.1% 51.3%
4017268 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 42.0 2.67e-01 88.6% 64.0%
5056750 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.44e-01 100.0% 39.1%
3397526 11.1.1.31 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.55 44.0 3.60e-01 100.0% 45.0%
4811157 2003.1.2.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.55 40.0 2.78e-01 81.8% 35.1%
3624942 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.55 45.0 3.48e-01 100.0% 88.7%
4879313 2498.1.1.15 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M27 0.54 38.0 2.29e-01 79.5% 67.6%
3614539 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 42.0 3.39e-01 100.0% 52.7%
3702049 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.54 37.0 2.65e-01 72.7% 56.7%
4954624 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.35e-01 100.0% 42.1%
3950412 11.1.4.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 0.54 40.0 3.59e-01 100.0% 53.3%
1953486 2007.1.7.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH 0.54 40.0 2.88e-01 86.4% 48.8%
3935786 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.68e-01 88.6% 93.8%
4028847 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 41.0 3.34e-01 93.2% 86.0%
3360324 2485.1.1.12 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.53 37.0 2.76e-01 72.7% 73.8%
4564336 1.1.9.11 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 0.52 35.0 3.39e-01 100.0% 56.7%
2138587 2498.1.1.23 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M49 0.51 38.0 2.14e-01 90.9% 51.2%
5078474 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.51 40.0 2.57e-01 100.0% 44.1%
2983287 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 35.0 2.67e-01 79.5% 39.1%
3928538 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 38.0 3.03e-01 100.0% 76.8%