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IMGVR_UViG_3300004280_000382-3300004280-Ga0066606_100080541

Arc-Vir

IMGVR_UViG_3300004280_000382-3300004280-Ga0066606_100080541

Identity

Kingdom:
archaea

Quality

81.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-54
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 4.86e-01 84.9% 91.1%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.73 65.0 4.39e-01 100.0% 87.5%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.71 53.0 3.90e-01 92.5% 30.7%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.80e-01 88.7% 98.8%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 61.0 5.14e-01 98.1% 95.3%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.53e-01 88.7% 88.8%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.66 55.0 5.06e-01 92.5% 73.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.00e-01 79.2% 96.8%
5jpoD01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 37.0 3.21e-01 86.8% 35.4%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 50.0 3.73e-01 94.3% 49.3%
1pjqA02 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.59 35.0 4.05e-01 75.5% 86.1%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.43e-01 92.5% 62.9%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.57 50.0 3.36e-01 100.0% 47.4%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.41e-01 100.0% 63.2%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.54 45.0 4.38e-01 94.3% 83.3%
6hbzA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 45.0 3.18e-01 92.5% 35.2%
2hpiA03 1.10.10.1600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain 0.52 40.0 3.68e-01 84.9% 97.2%
3lkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.52e-01 88.7% 16.3%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3179505 633.23.1.22 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.76 68.0 4.84e-01 100.0% 59.4%
4383623 2004.1.1.32 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,UvrB 0.71 65.0 4.28e-01 100.0% 98.5%
3943611 601.27.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › DUF3053 0.71 61.0 4.10e-01 100.0% 29.3%
4060154 4974.1.1.0 ↗ alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain 0.69 54.0 3.60e-01 88.7% 23.2%
3585138 4275.1.1.9 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › PF26809 0.68 57.0 3.96e-01 94.3% 37.1%
3757451 3755.3.1.297 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 0.67 57.0 4.08e-01 96.2% 49.4%
3702712 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 57.0 3.83e-01 98.1% 51.6%
3833753 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 54.0 3.01e-01 90.6% 6.2%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.66 53.0 4.56e-01 88.7% 98.8%
3289373 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.66 56.0 3.97e-01 90.6% 36.6%
2613 101.1.2.105 ↗ alpha arrays › HTH › HTH › winged helix domain › MotA_activ 0.65 48.0 4.00e-01 79.2% 96.8%
None — 0.65 54.0 2.99e-01 90.6% 9.4%
3605428 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.64 56.0 3.68e-01 100.0% 30.7%
4585740 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.64 57.0 4.77e-01 100.0% 81.1%
3601023 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 56.0 3.71e-01 100.0% 26.2%
4214015 101.11.1.0 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.63 57.0 4.46e-01 100.0% 69.1%
None — 0.63 53.0 2.98e-01 94.3% 10.2%
3929433 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.61 53.0 4.21e-01 100.0% 60.9%
3709334 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 43.0 3.55e-01 75.5% 83.2%
3187789 2002.1.1.111 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.59 50.0 3.07e-01 94.3% 18.8%
4969797 2498.1.1.39 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like 0.57 41.0 3.24e-01 88.7% 35.7%
4991135 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 46.0 3.88e-01 100.0% 61.0%
3533560 101.19.1.1 ↗ alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C 0.54 38.0 3.35e-01 77.4% 56.5%
3331594 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 42.0 3.63e-01 84.9% 75.0%