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IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167244

Arc-Vir

IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167244

Quality

59.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 66-156
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.72 53.0 4.70e-01 76.9% 97.6%
3imoC00 3.30.920.70 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › 0.71 59.0 5.60e-01 93.4% 76.6%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 52.0 4.57e-01 76.9% 95.5%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 52.0 4.58e-01 78.0% 95.5%
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.70 50.0 4.37e-01 74.7% 61.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 50.0 4.45e-01 75.8% 97.7%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.69 62.0 5.54e-01 100.0% 95.3%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.69 58.0 4.84e-01 94.5% 81.8%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.68 59.0 5.62e-01 95.6% 85.7%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 49.0 4.40e-01 75.8% 98.4%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.67 60.0 5.40e-01 100.0% 94.5%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 53.0 4.71e-01 87.9% 80.3%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.65 49.0 5.04e-01 80.2% 84.7%
3ni8A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 54.0 4.71e-01 91.2% 81.4%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 47.0 3.70e-01 76.9% 76.8%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.63 52.0 4.45e-01 90.1% 73.3%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 45.0 3.53e-01 75.8% 90.9%
1x53A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 52.0 4.67e-01 94.5% 79.4%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.61 54.0 3.73e-01 98.9% 85.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 48.0 3.92e-01 84.6% 61.4%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 52.0 4.11e-01 100.0% 57.7%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 50.0 4.15e-01 91.2% 60.9%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 44.0 4.05e-01 76.9% 98.3%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 42.0 2.90e-01 72.5% 20.6%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 36.0 4.07e-01 84.6% 78.9%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.59 41.0 3.02e-01 79.1% 26.5%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.59 43.0 4.31e-01 76.9% 93.7%
6i7sG01 2.30.230.10 Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A 0.59 43.0 3.19e-01 78.0% 76.6%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 48.0 3.87e-01 87.9% 66.1%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.58 48.0 3.24e-01 89.0% 96.4%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.57 48.0 4.40e-01 91.2% 87.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.57 44.0 4.69e-01 91.2% 95.0%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.57 38.0 3.86e-01 74.7% 69.3%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 42.0 3.40e-01 78.0% 40.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.56 37.0 3.84e-01 100.0% 72.6%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 42.0 2.97e-01 82.4% 37.9%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.32e-01 93.4% 66.7%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 4.24e-01 94.5% 90.1%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.55 42.0 4.10e-01 82.4% 83.3%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 2.93e-01 75.8% 83.5%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 46.0 4.49e-01 93.4% 92.9%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 40.0 3.62e-01 79.1% 90.8%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 4.16e-01 89.0% 97.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.78e-01 93.4% 93.2%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.54 40.0 4.25e-01 87.9% 96.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 40.0 3.66e-01 79.1% 60.0%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 46.0 3.05e-01 100.0% 91.7%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 41.0 4.16e-01 92.3% 86.0%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 40.0 2.99e-01 86.8% 56.2%
4be3A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 38.0 2.70e-01 80.2% 40.1%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.69e-01 93.4% 91.3%
1b9vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 41.0 2.81e-01 93.4% 79.0%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.61e-01 73.6% 36.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5047554 241.1.1.5 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 0.75 67.0 5.67e-01 98.9% 92.0%
3216442 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.72 51.0 3.85e-01 73.6% 37.6%
4123723 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.70 63.0 6.11e-01 100.0% 100.0%
3495405 3131.1.1.1 a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.70 50.0 4.17e-01 73.6% 65.3%
1063623 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 51.0 4.40e-01 76.9% 94.2%
3609492 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.69 51.0 4.40e-01 78.0% 57.9%
4953273 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.69 49.0 4.24e-01 74.7% 57.9%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 50.0 4.52e-01 76.9% 97.6%
3536576 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.68 45.0 4.69e-01 70.3% 72.9%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.68 46.0 4.36e-01 70.3% 64.5%
2557239 223.2.1.17 a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 0.67 48.0 4.06e-01 73.6% 48.6%
5034417 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.67 51.0 5.19e-01 81.3% 83.1%
4947136 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.67 51.0 5.17e-01 81.3% 82.2%
3605770 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 58.0 4.37e-01 98.9% 56.7%
4956163 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.66 47.0 3.70e-01 73.6% 37.2%
3464402 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.65 43.0 4.86e-01 97.8% 93.8%
3818511 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.63 50.0 4.42e-01 84.6% 80.0%
3630050 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.62 51.0 4.36e-01 91.2% 68.4%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 43.0 3.08e-01 71.4% 25.9%
5004346 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.62 47.0 4.90e-01 81.3% 92.9%
5076458 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.61 51.0 4.45e-01 91.2% 75.7%
3782542 6109.1.1.1 a+b two layers › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › N-terminal domain of chitin biosynthesis protein CHS6 › ChAPs 0.61 45.0 3.54e-01 76.9% 60.5%
3427602 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.61 44.0 3.06e-01 75.8% 86.7%
5064269 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.61 47.0 4.88e-01 83.5% 89.4%
3519502 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.60 52.0 4.70e-01 95.6% 80.8%
4995145 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.60 46.0 4.74e-01 80.2% 89.4%
3942181 6150.1.1.0 a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 0.60 46.0 4.40e-01 81.3% 94.3%
3986751 3197.1.1.0 a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.60 42.0 3.97e-01 73.6% 80.0%
3856809 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 50.0 5.02e-01 95.6% 96.7%
3668463 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 52.0 3.87e-01 98.9% 57.5%
3387934 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.59 46.0 4.54e-01 84.6% 80.0%
4464657 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 36.0 3.85e-01 73.6% 70.0%
3403609 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.59 44.0 4.62e-01 81.3% 91.1%
3617983 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 50.0 3.31e-01 96.7% 82.0%
5037031 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.58 44.0 4.29e-01 83.5% 72.8%
5053431 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.57 48.0 4.03e-01 94.5% 53.5%
5016545 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.57 44.0 3.77e-01 84.6% 62.0%
4975323 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 46.0 4.69e-01 98.9% 91.1%
5048592 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 45.0 4.10e-01 91.2% 77.7%
3006806 10.1.1.27 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 0.55 46.0 3.16e-01 93.4% 52.8%
3214097 330.1.1.24 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C 0.55 39.0 4.09e-01 83.5% 81.2%
1900833 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.54 38.0 3.37e-01 73.6% 83.0%
3717900 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 44.0 2.90e-01 89.0% 67.9%
5017958 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 46.0 3.93e-01 96.7% 74.7%
1184367 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 43.0 4.34e-01 91.2% 87.9%
3627527 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.53 42.0 3.71e-01 89.0% 85.5%
4978392 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.52 43.0 4.10e-01 92.3% 89.1%
3268843 331.18.1.4 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B 0.52 45.0 3.66e-01 96.7% 82.9%
3782688 59.1.4.1 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N 0.51 37.0 3.10e-01 76.9% 73.7%
4942876 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 40.0 4.25e-01 100.0% 98.8%
4204450 2004.1.1.442 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.51 36.0 2.42e-01 73.6% 26.7%
3697524 9.2.1.7 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.51 44.0 4.49e-01 97.8% 98.9%
3396735 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 34.0 3.07e-01 70.3% 50.0%