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IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167262

Arc-Vir

IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167262

Identity

Kingdom:
archaea

Quality

84.6 mean pLDDT

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-74
PDB
Domain cluster: rep: IMGVR_UViG_650716053_000001-650716053-650872016__D7-102
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.87 72.0 6.57e-01 100.0% 68.8%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 46.0 4.70e-01 100.0% 76.1%
3ufeA02 1.20.58.1950 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 46.0 5.23e-01 84.7% 98.1%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.65 48.0 4.37e-01 79.2% 63.6%
4tpoA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 44.0 2.76e-01 70.8% 33.4%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.62 50.0 4.26e-01 91.7% 67.7%
3dewA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 43.0 3.46e-01 73.6% 45.7%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.61 45.0 4.44e-01 90.3% 74.4%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.60 48.0 4.52e-01 88.9% 86.8%
4r3aA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 47.0 3.57e-01 97.2% 93.2%
2raeA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 47.0 3.83e-01 100.0% 79.6%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 44.0 3.36e-01 100.0% 91.3%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 36.0 3.66e-01 72.2% 95.9%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.51 43.0 3.50e-01 100.0% 86.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1141934 3162.1.1.1 ↗ a+b two layers › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › a functionally unknown protein from Leptospirillum sp. Group II UBA › DUF6840 0.88 73.0 6.58e-01 100.0% 66.7%
3389798 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.62 48.0 4.85e-01 98.6% 85.7%
5003022 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.61 43.0 3.00e-01 75.0% 28.6%
4149276 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.60 49.0 3.79e-01 90.3% 52.7%
3253023 708.1.2.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.59 47.0 3.61e-01 84.7% 78.6%
3598156 230.4.1.0 ↗ a+b two layers › T-fold › ApbE-like › ApbE-like 0.59 50.0 3.81e-01 100.0% 91.3%
5079783 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 2.82e-01 88.9% 26.9%
4954771 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.57 43.0 3.26e-01 87.5% 34.1%
5074594 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 48.0 3.91e-01 97.2% 90.0%
3816635 219.1.1.79 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 0.56 38.0 3.06e-01 70.8% 42.7%
1697857 304.48.1.30 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom 0.55 46.0 3.07e-01 100.0% 65.5%
3861079 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 40.0 2.76e-01 79.2% 54.0%
4562263 3435.1.1.1 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.52 45.0 2.97e-01 97.2% 27.0%
3606650 6132.1.1.0 ↗ alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.52 43.0 3.82e-01 93.1% 88.6%
3171279 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.51 43.0 2.82e-01 97.2% 84.6%
4405472 4970.1.1.1 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.51 40.0 3.37e-01 84.7% 89.6%
5057042 605.1.1.355 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › RDD 0.50 39.0 3.31e-01 98.6% 48.1%
D2 high residues 91-130
PDB
Domain cluster: representative