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IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167266

Arc-Vir

IMGVR_UViG_3300005095_000540-3300005095-Ga0072504_10167266

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.72 50.0 4.16e-01 73.3% 95.4%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.72 43.0 3.21e-01 75.0% 24.2%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.70 52.0 3.82e-01 78.3% 40.3%
4crsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 3.64e-01 75.0% 37.3%
1zsqA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 51.0 4.37e-01 86.7% 97.0%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.64 43.0 3.69e-01 75.0% 43.6%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 4.08e-01 76.7% 72.3%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.63 44.0 3.31e-01 81.7% 28.3%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 44.0 3.58e-01 75.0% 53.0%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.61 41.0 3.73e-01 76.7% 48.9%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 3.69e-01 90.0% 91.4%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.54e-01 83.3% 88.5%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.59 43.0 2.76e-01 80.0% 30.8%
8hpoK01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.11e-01 100.0% 41.6%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.16e-01 100.0% 22.7%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.18e-01 100.0% 33.5%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.57 44.0 3.91e-01 85.0% 71.1%
2l97A01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 39.0 3.40e-01 73.3% 72.7%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.57 43.0 3.89e-01 85.0% 75.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.57 35.0 3.36e-01 71.7% 50.0%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.56 46.0 2.99e-01 100.0% 27.7%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.06e-01 100.0% 48.3%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 46.0 3.50e-01 100.0% 66.3%
1bebA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.21e-01 86.7% 80.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.55 48.0 3.82e-01 100.0% 53.6%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 46.0 3.53e-01 100.0% 67.5%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.55 37.0 3.28e-01 71.7% 60.8%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.54 39.0 3.25e-01 80.0% 42.6%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 37.0 3.27e-01 71.7% 71.4%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.54 41.0 3.59e-01 83.3% 73.7%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 38.0 2.76e-01 76.7% 75.1%
1evjC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 42.0 3.04e-01 86.7% 87.8%
3eweA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 3.01e-01 98.3% 83.9%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.50e-01 86.7% 85.0%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.53 43.0 3.48e-01 98.3% 91.2%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 36.0 2.44e-01 71.7% 49.4%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.29e-01 91.7% 98.0%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.53 36.0 3.34e-01 75.0% 87.2%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.52 39.0 2.91e-01 83.3% 85.7%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.52 38.0 3.29e-01 85.0% 65.2%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 35.0 3.29e-01 75.0% 84.5%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.50e-01 91.7% 99.0%
1okjB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 3.20e-01 90.0% 97.6%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.50 34.0 2.47e-01 73.3% 25.8%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.47e-01 96.7% 84.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1547989 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 55.0 3.39e-01 91.7% 26.1%
3797723 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.66 47.0 2.94e-01 76.7% 16.3%
3785788 5.1.4.31 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.65 53.0 3.14e-01 98.3% 11.2%
3366452 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 55.0 3.36e-01 98.3% 86.3%
3717742 5.1.4.422 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 0.65 55.0 3.06e-01 95.0% 9.6%
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 47.0 4.32e-01 78.3% 65.0%
3704808 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.24e-01 95.0% 16.0%
1141888 331.10.2.2 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SpmSyn_N 0.64 42.0 3.63e-01 75.0% 42.7%
3216882 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 57.0 3.51e-01 100.0% 30.9%
3446884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.39e-01 78.3% 67.1%
3440332 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 54.0 3.32e-01 100.0% 29.5%
3474310 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.62 42.0 3.57e-01 90.0% 40.0%
4090709 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.62 43.0 3.62e-01 98.3% 41.3%
3389668 220.1.1.160 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD 0.61 44.0 3.75e-01 76.7% 54.0%
3931122 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.81e-01 76.7% 57.9%
3254907 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 52.0 3.22e-01 100.0% 52.1%
3740897 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.60 50.0 3.18e-01 98.3% 17.0%
4964910 300.1.1.25 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › TbsP_N 0.60 54.0 4.09e-01 100.0% 77.9%
4949274 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.60 50.0 3.96e-01 100.0% 79.3%
4856681 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.60 46.0 3.65e-01 85.0% 88.0%
2720803 5.1.4.338 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF28639 0.59 50.0 3.80e-01 95.0% 44.2%
3933100 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 40.0 3.79e-01 75.0% 60.0%
3623534 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 42.0 3.77e-01 76.7% 70.0%
4942828 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.59 45.0 3.35e-01 85.0% 91.5%
3355726 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.25e-01 100.0% 62.2%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 45.0 3.68e-01 88.3% 43.2%
2773872 5.1.5.79 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, WDR90_beta-prop_4th 0.58 50.0 3.17e-01 100.0% 37.8%
4962459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.87e-01 81.7% 78.4%
3740379 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 38.0 3.86e-01 71.7% 68.3%
4288795 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.58 50.0 3.08e-01 100.0% 50.5%
5018514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 3.82e-01 96.7% 98.5%
5025256 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 51.0 3.13e-01 100.0% 40.0%
1877235 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 49.0 4.28e-01 95.0% 93.3%
3929256 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.57 47.0 3.60e-01 90.0% 96.4%
3392130 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.57 39.0 3.87e-01 73.3% 75.4%
3172569 220.1.1.245 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29445 0.57 50.0 3.86e-01 100.0% 72.6%
3657857 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.57 40.0 2.62e-01 75.0% 77.8%
3420355 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 49.0 3.24e-01 100.0% 50.4%
3931349 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.56 43.0 3.46e-01 90.0% 82.0%
3479661 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 38.0 3.06e-01 70.0% 40.0%
3223067 5.1.4.312 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_WDHD1_1st 0.56 48.0 3.04e-01 100.0% 61.2%
3203652 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 44.0 2.74e-01 91.7% 18.7%
3587198 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.55 46.0 3.65e-01 100.0% 75.0%
4277215 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.55 46.0 3.49e-01 100.0% 61.0%
5794 295.1.1.7 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.55 46.0 3.53e-01 100.0% 67.5%
4029690 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.51e-01 96.7% 11.6%
4963506 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 41.0 3.28e-01 100.0% 37.9%
5004057 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.53 45.0 3.37e-01 100.0% 72.7%
3690077 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 40.0 2.65e-01 80.0% 25.3%
5008536 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.52 44.0 3.43e-01 100.0% 72.9%
4981563 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 39.0 3.33e-01 96.7% 48.2%
5011251 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.51 44.0 3.49e-01 100.0% 72.3%
4950700 2485.1.1.82 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › ATP-synt_10 0.51 43.0 3.21e-01 96.7% 94.4%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 37.0 2.74e-01 88.3% 25.5%