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IMGVR_UViG_3300005098_000005-3300005098-Ga0072683_10060613
Arc-VirIMGVR_UViG_3300005098_000005-3300005098-Ga0072683_10060613
Identity
- Kingdom:
- archaea
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-31_94-162
Domain cluster:
rep: IMGVR_UViG_3300005095_000166-3300005095-Ga0072504_15106112__D6-95
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.75 | 57.0 | 5.40e-01 | 80.0% | 92.7% |
| 3fgxA00 | 3.30.2220.10 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 | 0.61 | 46.0 | 4.64e-01 | 80.0% | 83.3% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 41.0 | 3.79e-01 | 72.6% | 77.2% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 30.0 | 3.38e-01 | 90.5% | 65.7% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 45.0 | 4.45e-01 | 84.2% | 97.1% |
| 3m8jA00 | 1.10.10.2690 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.56 | 36.0 | 3.74e-01 | 71.6% | 67.8% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 44.0 | 3.68e-01 | 86.3% | 75.0% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.54 | 31.0 | 2.99e-01 | 71.6% | 47.3% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.54 | 42.0 | 4.52e-01 | 83.2% | 97.5% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.54 | 35.0 | 3.50e-01 | 85.3% | 62.4% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.53 | 36.0 | 2.86e-01 | 70.5% | 82.9% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.51 | 40.0 | 3.99e-01 | 83.2% | 89.7% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 41.0 | 3.65e-01 | 87.4% | 61.6% |
| 2q1fA02 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.50 | 44.0 | 2.95e-01 | 100.0% | 75.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3975686 | 6050.1.1.2 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage_TAC_2 | 0.73 | 54.0 | 5.28e-01 | 77.9% | 100.0% |
| 3944499 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.68 | 50.0 | 5.20e-01 | 76.8% | 95.3% |
| 3697264 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.62 | 44.0 | 3.41e-01 | 71.6% | 53.6% |
| 5040771 | 2004.1.1.85 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase | 0.59 | 47.0 | 3.17e-01 | 84.2% | 39.4% |
| 3911158 | 515.1.1.1 ↗ | alpha arrays › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › Transcription factor STAT-4 N-domain › STAT_int | 0.55 | 38.0 | 3.50e-01 | 70.5% | 86.7% |
| 4977471 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.55 | 42.0 | 3.05e-01 | 84.2% | 57.2% |
| 4966215 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.08e-01 | 72.6% | 43.0% |
| 3820110 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 42.0 | 3.68e-01 | 84.2% | 82.1% |
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.52 | 40.0 | 3.74e-01 | 84.2% | 65.0% |
| 3972270 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.52 | 30.0 | 3.41e-01 | 85.3% | 75.7% |
| 2674774 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.52 | 38.0 | 3.72e-01 | 78.9% | 91.7% |
D2
high
residues 38-92
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.58 | 44.0 | 3.04e-01 | 87.3% | 87.9% |
| 2a3qA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 42.0 | 3.40e-01 | 87.3% | 44.2% |
| 2w45A01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.53 | 39.0 | 3.09e-01 | 83.6% | 37.9% |
| 7lb8B01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.53 | 41.0 | 2.70e-01 | 96.4% | 65.6% |
| 3wscA00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.51 | 41.0 | 2.69e-01 | 92.7% | 29.1% |
| 7caqA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.50 | 34.0 | 2.37e-01 | 74.5% | 19.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2088309 | 108.1.2.1 ↗ | alpha arrays › EF-hand › EF-hand-related › Type I dockerin domain › Dockerin_1 | 0.60 | 46.0 | 4.27e-01 | 92.7% | 89.9% |
| 5002525 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.57 | 46.0 | 3.57e-01 | 100.0% | 40.0% |
| 3314516 | 192.18.1.3 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like › PIG-Y | 0.57 | 42.0 | 3.96e-01 | 83.6% | 70.0% |
| 3902012 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.56 | 42.0 | 3.98e-01 | 90.9% | 67.1% |
| 3944033 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.55 | 42.0 | 3.10e-01 | 83.6% | 31.7% |
| 3293670 | 3525.1.1.1 ↗ | alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › BET | 0.53 | 40.0 | 3.55e-01 | 83.6% | 56.2% |
| 3709158 | 4120.1.1.82 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › Hikeshi-like_C | 0.52 | 38.0 | 3.78e-01 | 81.8% | 73.3% |
| 3511116 | 145.1.1.4 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › ASXH | 0.51 | 38.0 | 3.28e-01 | 81.8% | 68.2% |
| 3965758 | 150.1.2.21 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase › DUF455 | 0.50 | 41.0 | 2.75e-01 | 100.0% | 47.2% |