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IMGVR_UViG_3300005098_000137-3300005098-Ga0072683_1057853
Arc-VirIMGVR_UViG_3300005098_000137-3300005098-Ga0072683_1057853
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-83
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06150.18 best | ChaB | 74.3 | 1.40e-20 | 75.3% | 96.7% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.88 | 67.0 | 6.64e-01 | 79.5% | 88.0% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.85 | 47.0 | 5.88e-01 | 72.6% | 91.1% |
| 1j78A05 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.71 | 42.0 | 4.60e-01 | 71.2% | 71.7% |
| 1bi0A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.69 | 36.0 | 3.83e-01 | 75.3% | 56.1% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.68 | 45.0 | 5.00e-01 | 75.3% | 87.7% |
| 1e94A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.67 | 47.0 | 3.48e-01 | 72.6% | 68.4% |
| 3looB01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.63 | 52.0 | 3.45e-01 | 89.0% | 42.8% |
| 2yzsA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.63 | 50.0 | 3.60e-01 | 90.4% | 46.1% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 3.60e-01 | 98.6% | 37.7% |
| 4e69A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 52.0 | 3.32e-01 | 89.0% | 33.2% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 50.0 | 3.99e-01 | 91.8% | 85.8% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.33e-01 | 91.8% | 64.2% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.54e-01 | 87.7% | 74.7% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 45.0 | 3.75e-01 | 94.5% | 45.0% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.59 | 41.0 | 4.34e-01 | 75.3% | 79.1% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 3.84e-01 | 91.8% | 49.2% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.58 | 41.0 | 3.29e-01 | 89.0% | 34.6% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 42.0 | 3.56e-01 | 98.6% | 44.2% |
| 3ptjA00 | 3.10.310.50 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.57 | 44.0 | 3.48e-01 | 84.9% | 56.2% |
| 1lzwA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.55 | 38.0 | 3.55e-01 | 71.2% | 75.8% |
| 1yg2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 4.26e-01 | 93.2% | 81.0% |
| 2hekA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.54 | 48.0 | 3.24e-01 | 100.0% | 78.3% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.41e-01 | 91.8% | 44.9% |
| 3qitB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 40.0 | 2.72e-01 | 94.5% | 20.8% |
| 2wzfA01 | 1.10.1740.130 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.53 | 41.0 | 3.77e-01 | 89.0% | 82.7% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.52 | 45.0 | 3.55e-01 | 97.3% | 60.9% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.92e-01 | 90.4% | 76.5% |
| 4cvnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.99e-01 | 82.2% | 34.6% |
| 1in4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 34.0 | 3.46e-01 | 84.9% | 67.1% |
| 6dqoA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 40.0 | 3.19e-01 | 90.4% | 87.3% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.62e-01 | 86.3% | 66.3% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.51 | 37.0 | 2.60e-01 | 79.5% | 51.2% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.25e-01 | 91.8% | 46.6% |
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 39.0 | 2.73e-01 | 91.8% | 35.7% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4172097 | 4084.1.1.1 ↗ | alpha bundles › ChaB-like › ChaB-like › ChaB-like › ChaB | 0.91 | 65.0 | 7.20e-01 | 74.0% | 90.0% |
| 3215295 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.70 | 53.0 | 5.12e-01 | 79.5% | 96.2% |
| 4108185 | 210.1.1.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome | 0.67 | 47.0 | 3.51e-01 | 72.6% | 52.6% |
| 5078903 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.67 | 48.0 | 4.10e-01 | 98.6% | 46.7% |
| 5027627 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.66 | 36.0 | 4.03e-01 | 86.3% | 69.1% |
| 5043021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 4.23e-01 | 95.9% | 58.9% |
| 3353864 | 101.1.2.212 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cac1_C | 0.65 | 44.0 | 4.49e-01 | 83.6% | 72.9% |
| 5058202 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.64 | 51.0 | 3.56e-01 | 84.9% | 37.4% |
| 3657853 | 101.1.1.210 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Cac1_C | 0.64 | 43.0 | 4.53e-01 | 87.7% | 78.5% |
| 4934737 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.63 | 46.0 | 4.54e-01 | 94.5% | 71.2% |
| 3320423 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 48.0 | 4.42e-01 | 84.9% | 82.0% |
| 4979152 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.63 | 46.0 | 4.21e-01 | 94.5% | 60.0% |
| 4931635 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.62 | 45.0 | 4.39e-01 | 94.5% | 69.0% |
| 5031879 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 4.19e-01 | 91.8% | 62.1% |
| 3412176 | 174.1.1.1 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin | 0.60 | 51.0 | 4.08e-01 | 91.8% | 67.1% |
| 4198250 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 45.0 | 4.58e-01 | 86.3% | 84.3% |
| 3201764 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.59 | 44.0 | 3.86e-01 | 91.8% | 51.3% |
| 4947296 | 101.1.2.905 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4443 | 0.59 | 42.0 | 4.22e-01 | 97.3% | 73.3% |
| 5032090 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.59 | 40.0 | 4.15e-01 | 87.7% | 74.3% |
| 4991185 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.58 | 44.0 | 4.29e-01 | 91.8% | 73.8% |
| 3952706 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.57 | 43.0 | 4.35e-01 | 83.6% | 80.0% |
| 5077394 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.57 | 41.0 | 3.65e-01 | 91.8% | 50.4% |
| 4073136 | 2003.6.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK | 0.57 | 44.0 | 3.01e-01 | 84.9% | 24.2% |
| 3175241 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.57 | 45.0 | 3.40e-01 | 87.7% | 79.4% |
| 3729602 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.57 | 39.0 | 3.63e-01 | 72.6% | 69.5% |
| 5038669 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.56 | 42.0 | 3.66e-01 | 91.8% | 51.3% |
| 4948727 | 101.1.2.934 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N | 0.56 | 39.0 | 4.00e-01 | 93.2% | 75.7% |
| 4463224 | 148.1.3.15 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_assoc_2 | 0.56 | 40.0 | 3.67e-01 | 76.7% | 80.0% |
| 5040538 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 41.0 | 3.95e-01 | 89.0% | 67.9% |
| 4928111 | 2005.1.1.4 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase | 0.56 | 40.0 | 2.81e-01 | 78.1% | 28.4% |
| 3812213 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.55 | 44.0 | 3.45e-01 | 89.0% | 84.8% |
| 3170687 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.55 | 44.0 | 3.33e-01 | 87.7% | 79.4% |
| 3462514 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.55 | 43.0 | 3.31e-01 | 87.7% | 79.4% |
| 3741196 | 6091.1.1.0 ↗ | alpha bundles › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase › Helical bundle domain in Endo-alpha-N-acetylgalactosaminidase | 0.55 | 38.0 | 3.45e-01 | 72.6% | 87.0% |
| 5043593 | 5051.1.1.3 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SSF | 0.55 | 47.0 | 2.91e-01 | 100.0% | 79.6% |
| 5000311 | 2484.1.1.87 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C | 0.54 | 42.0 | 3.29e-01 | 84.9% | 76.4% |
| None | — | 0.54 | 43.0 | 3.34e-01 | 89.0% | 84.1% | |
| 4997796 | 2006.1.6.45 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › PF30231 | 0.53 | 43.0 | 2.93e-01 | 91.8% | 90.3% |
| 5053119 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.45e-01 | 89.0% | 50.8% |
| 3805839 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.53 | 36.0 | 3.44e-01 | 86.3% | 61.2% |
| 3568354 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.85e-01 | 91.8% | 71.8% |
| 5022395 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.52 | 45.0 | 3.48e-01 | 97.3% | 61.2% |
| 3596081 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 36.0 | 3.29e-01 | 72.6% | 84.2% |
| 4973149 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 44.0 | 2.89e-01 | 97.3% | 67.4% |
| 5007549 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.72e-01 | 90.4% | 65.3% |
| 4933710 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 40.0 | 2.60e-01 | 87.7% | 19.0% |
| 2773715 | 4266.1.1.4 ↗ | alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › Glyco_hydro_84_hel | 0.51 | 37.0 | 2.98e-01 | 75.3% | 39.6% |
| 2867996 | 101.1.2.457 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_AprA | 0.50 | 38.0 | 3.07e-01 | 83.6% | 69.9% |